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WormBase Tree Display for Sequence: Y39E4B

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Name Class

Y39E4BDNAY39E4B155693
SMapS_childGene_child (19)
CDS_child (628)
TranscriptY39E4B.155141751397
Y39E4B.169605896040
Y39E4B.16:wp2419605896040
Y39E4B.17100236100292
Y39E4B.18101758100615
Y39E4B.19101758101470
Y39E4B.1.18642092887
Y39E4B.10a.18546174770
Y39E4B.10b.18546175349
Y39E4B.10c.18008675976
Y39E4B.10d.17752575976
Y39E4B.11.1137585139996
Y39E4B.12a.1119995137498
Y39E4B.12a.2120705137503
Y39E4B.12b.1119995137500
Y39E4B.12b.2120711137504
Y39E4B.12c.1119993137500
Y39E4B.12c.2120706137506
Y39E4B.13.12372526261
Y39E4B.2.110214498262
Y39E4B.3a.13205820082
Y39E4B.3b.13206420078
Y39E4B.3c.13206422996
Y39E4B.4.1145269147066
Y39E4B.5.1102519105709
Y39E4B.6a.133596908
Y39E4B.6b.133796437
Y39E4B.7a.14029551292
Y39E4B.7b.14029551292
Y39E4B.8.15242366541
Y39E4B.9a.17222966509
Y39E4B.9a.27061066509
Y39E4B.9b.16983566617
Y39E4B.9c.17221766617
Y39E4B.9d.17222966528
PseudogeneY39E4B.149507897467
PCR_product (60)
Allele (2167)
Oligo_set (16)
Feature_object (977)
Feature_dataY39E4B:Polysome1155693
Y39E4B:TranscriptionallyActiveRegion1155693
Y39E4B:ChIPSeqTF1155693
Y39E4B:TRF1155693
Y39E4B:Dust1155693
Y39E4B:inverted1155693
Homol_data (22)
StructureFromSourceCHROMOSOME_III
Overlap_rightY43F4A155577
Overlap_leftF54F12
Clone_left_endY43F4155577
Y39E4B1
Clone_right_endF54F12104
Y37D898642
Y39E4B155693
DB_infoDatabaseEMBLNDB_ACAL110487
NDB_SVAL110487.2
Secondary_accessionZ94158
DB_remark[121025] Sequence correction: SNP 0 bases @ 88502
KeywordHTG
EMBL_dump_infoEMBL_dump_methodworm_EMBL-dump
OriginFrom_authorBarlow K
From_laboratoryHX
Date_directory981221
SpeciesCaenorhabditis elegans
StrainWBStrain00000001
VisibleCloneY39E4B
PropertiesGenomic_canonical
ChecksumMD562aa6c45cae215abae44a527e947d42d
StatusFinished21 Dec 1998 00:00:00
Submitted21 Dec 1998 00:00:00
Annotated30 Sep 1999 00:00:00
MapSequence-IIIEndsLeft6477
Right6551
Interpolated_map_positionIII20.8841
Assembly_tagsFinished Left14Y39E4B
Clone right end101104F54F12
9864298637Y37D8
annotation4771547781First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region covered only from subcloned reads taken from a pcr product produced from yac dna.
7812478193First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region only covered by subclone sl39b10. This clone has been sequenced using both chemistries. Lies in the arm of an inverted repeat.
8040380403
First select a Feature -
[ ] Unsure
[X] Misc_feature
Then select the text for the note(s) -
[ ] Tandem repeat
[ ] Single clone region
[ ] Forced join
[X] Other
Add a comment here -
Subclone from overlaping project Y37D8 reads AG.
153897153910First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Yac sequence shows 14 c's but the reads from the underlying clone F09D11 all say 13. It has been edited to the consensus of the yac.
733519367First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[X] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region contains a tandem repeat each copy is approximately 58bp and there is variation amongst the copies. Region also contains forced joins and single clones.
4808649566First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Single clone region covered by subclone qa58a3. This subclone has been sonicated.
7981379823
First select a Feature -
[ ] Unsure
[X] Misc_feature
Then select the text for the note(s) -
[ ] Tandem repeat
[X] Single clone region
[ ] Forced join
[ ] Other
Add a comment here -
Region covered only by sonications of subclone sl35a10.
8042281212First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Dispersed IR-2 inverted repeat similar to sequence U86947. Repeat is flanked by a tandem duplication of the sequence TAATC. Region also contains single clone section.
125999126063
First select a Feature -
[ ] Unsure
[X] Misc_feature
Then select the text for the note(s) -
[ ] Tandem repeat
[X] Single clone region
[ ] Forced join
[ ] Other
Add a comment here -
Region covered only with sonicated reads from subclone sm20b2.
126322127111First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Dispersed IR-2 inverted repeat similar to sequence U86947. Repeat is flanked by a tandem duplication of the sequence TATAA.
128336128339
First select a Feature -
[ ] Unsure
[X] Misc_feature
Then select the text for the note(s) -
[ ] Tandem repeat
[X] Single clone region
[ ] Forced join
[ ] Other
Add a comment here -
Single clone region containing sonicated reads from subclone sm19h10.
131108131552
First select a Feature -
[ ] Unsure
[X] Misc_feature
Then select the text for the note(s) -
[ ] Tandem repeat
[X] Single clone region
[ ] Forced join
[ ] Other
Add a comment here -
Region only contains sonicated reads from subclone sm27e7
132893132916
First select a Feature -
[ ] Unsure
[X] Misc_feature
Then select the text for the note(s) -
[ ] Tandem repeat
[X] Single clone region
[ ] Forced join
[ ] Other
Add a comment here -
Region covered only by sonicated reads from subclone sm30c7.
135559136159First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Some subclones show a deletion at this point. A digest on subclone sm23c6 showed two bands on the gel one of which was ~600bp smaller than the other. Region of sequence contains single direction primers. Subclone sm32e11 has totoally deleted this region which contains an inverted repeat.
Finished Right155689155693Y39E4B
Clone left end155582155577Y43F4
MethodGenomic_canonical