WormBase Tree Display for Sequence: Y39E4B
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Y39E4B | DNA | Y39E4B | 155693 | |||
---|---|---|---|---|---|---|
SMap | S_child | Gene_child (19) | ||||
CDS_child (628) | ||||||
Transcript | Y39E4B.15 | 51417 | 51397 | |||
Y39E4B.16 | 96058 | 96040 | ||||
Y39E4B.16:wp241 | 96058 | 96040 | ||||
Y39E4B.17 | 100236 | 100292 | ||||
Y39E4B.18 | 101758 | 100615 | ||||
Y39E4B.19 | 101758 | 101470 | ||||
Y39E4B.1.1 | 86420 | 92887 | ||||
Y39E4B.10a.1 | 85461 | 74770 | ||||
Y39E4B.10b.1 | 85461 | 75349 | ||||
Y39E4B.10c.1 | 80086 | 75976 | ||||
Y39E4B.10d.1 | 77525 | 75976 | ||||
Y39E4B.11.1 | 137585 | 139996 | ||||
Y39E4B.12a.1 | 119995 | 137498 | ||||
Y39E4B.12a.2 | 120705 | 137503 | ||||
Y39E4B.12b.1 | 119995 | 137500 | ||||
Y39E4B.12b.2 | 120711 | 137504 | ||||
Y39E4B.12c.1 | 119993 | 137500 | ||||
Y39E4B.12c.2 | 120706 | 137506 | ||||
Y39E4B.13.1 | 23725 | 26261 | ||||
Y39E4B.2.1 | 102144 | 98262 | ||||
Y39E4B.3a.1 | 32058 | 20082 | ||||
Y39E4B.3b.1 | 32064 | 20078 | ||||
Y39E4B.3c.1 | 32064 | 22996 | ||||
Y39E4B.4.1 | 145269 | 147066 | ||||
Y39E4B.5.1 | 102519 | 105709 | ||||
Y39E4B.6a.1 | 3359 | 6908 | ||||
Y39E4B.6b.1 | 3379 | 6437 | ||||
Y39E4B.7a.1 | 40295 | 51292 | ||||
Y39E4B.7b.1 | 40295 | 51292 | ||||
Y39E4B.8.1 | 52423 | 66541 | ||||
Y39E4B.9a.1 | 72229 | 66509 | ||||
Y39E4B.9a.2 | 70610 | 66509 | ||||
Y39E4B.9b.1 | 69835 | 66617 | ||||
Y39E4B.9c.1 | 72217 | 66617 | ||||
Y39E4B.9d.1 | 72229 | 66528 | ||||
Pseudogene | Y39E4B.14 | 95078 | 97467 | |||
PCR_product (60) | ||||||
Allele (2167) | ||||||
Oligo_set (16) | ||||||
Feature_object (977) | ||||||
Feature_data | Y39E4B:Polysome | 1 | 155693 | |||
Y39E4B:TranscriptionallyActiveRegion | 1 | 155693 | ||||
Y39E4B:ChIPSeqTF | 1 | 155693 | ||||
Y39E4B:TRF | 1 | 155693 | ||||
Y39E4B:Dust | 1 | 155693 | ||||
Y39E4B:inverted | 1 | 155693 | ||||
Homol_data (22) | ||||||
Structure | From | Source | CHROMOSOME_III | |||
Overlap_right | Y43F4A | 155577 | ||||
Overlap_left | F54F12 | |||||
Clone_left_end | Y43F4 | 155577 | ||||
Y39E4B | 1 | |||||
Clone_right_end | F54F12 | 104 | ||||
Y37D8 | 98642 | |||||
Y39E4B | 155693 | |||||
DB_info | Database | EMBL | NDB_AC | AL110487 | ||
NDB_SV | AL110487.2 | |||||
Secondary_accession | Z94158 | |||||
DB_remark | [121025] Sequence correction: SNP 0 bases @ 88502 | |||||
Keyword | HTG | |||||
EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
Origin | From_author | Barlow K | ||||
From_laboratory | HX | |||||
Date_directory | 981221 | |||||
Species | Caenorhabditis elegans | |||||
Strain | WBStrain00000001 | |||||
Visible | Clone | Y39E4B | ||||
Properties | Genomic_canonical | |||||
Checksum | MD5 | 62aa6c45cae215abae44a527e947d42d | ||||
Status | Finished | 21 Dec 1998 00:00:00 | ||||
Submitted | 21 Dec 1998 00:00:00 | |||||
Annotated | 30 Sep 1999 00:00:00 | |||||
Map | Sequence-III | Ends | Left | 6477 | ||
Right | 6551 | |||||
Interpolated_map_position | III | 20.8841 | ||||
Assembly_tags | Finished Left | 1 | 4 | Y39E4B | ||
Clone right end | 101 | 104 | F54F12 | |||
98642 | 98637 | Y37D8 | ||||
annotation | 47715 | 47781 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region covered only from subcloned reads taken from a pcr product produced from yac dna. | |||
78124 | 78193 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region only covered by subclone sl39b10. This clone has been sequenced using both chemistries. Lies in the arm of an inverted repeat. | ||||
80403 | 80403 | First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [X] Other Add a comment here - Subclone from overlaping project Y37D8 reads AG. | ||||
153897 | 153910 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Yac sequence shows 14 c's but the reads from the underlying clone F09D11 all say 13. It has been edited to the consensus of the yac. | ||||
7335 | 19367 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[X] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region contains a tandem repeat each copy is approximately 58bp and there is variation amongst the copies. Region also contains forced joins and single clones. | ||||
48086 | 49566 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Single clone region covered by subclone qa58a3. This subclone has been sonicated. | ||||
79813 | 79823 | First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Add a comment here - Region covered only by sonications of subclone sl35a10. | ||||
80422 | 81212 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Dispersed IR-2 inverted repeat similar to sequence U86947. Repeat is flanked by a tandem duplication of the sequence TAATC. Region also contains single clone section. | ||||
125999 | 126063 | First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Add a comment here - Region covered only with sonicated reads from subclone sm20b2. | ||||
126322 | 127111 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Dispersed IR-2 inverted repeat similar to sequence U86947. Repeat is flanked by a tandem duplication of the sequence TATAA. | ||||
128336 | 128339 | First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Add a comment here - Single clone region containing sonicated reads from subclone sm19h10. | ||||
131108 | 131552 | First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Add a comment here - Region only contains sonicated reads from subclone sm27e7 | ||||
132893 | 132916 | First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Add a comment here - Region covered only by sonicated reads from subclone sm30c7. | ||||
135559 | 136159 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Some subclones show a deletion at this point. A digest on subclone sm23c6 showed two bands on the gel one of which was ~600bp smaller than the other. Region of sequence contains single direction primers. Subclone sm32e11 has totoally deleted this region which contains an inverted repeat. | ||||
Finished Right | 155689 | 155693 | Y39E4B | |||
Clone left end | 155582 | 155577 | Y43F4 | |||
Method | Genomic_canonical |