WormBase Tree Display for Gene: WBGene00012715

WBGene00012715 SMap: S_parent: Sequence: Y39E4B
  Identity: Version: 2
    Name: CGC_name: snpc-1.2 Person_evidence: WBPerson2290
      Sequence_name: Y39E4B.2
      Molecular_name: Y39E4B.2
        Y39E4B.2.1
        CE21714
      Other_name: CELE_Y39E4B.2 Accession_evidence: NDB BX284603
      Public_name: snpc-1.2
    DB_info: Database: AceView gene 3O256
        WormQTL gene WBGene00012715
        WormFlux gene WBGene00012715
        NDB locus_tag CELE_Y39E4B.2
        Panther gene CAEEL|WormBase=WBGene00012715|UniProtKB=Q9U2K7
          family PTHR15131
        NCBI gene 176734
        RefSeq protein NM_067318.5
        TREEFAM TREEFAM_ID TF317804
        TrEMBL UniProtAcc Q9U2K7
        UniProt_GCRP UniProtAcc Q9U2K7
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 04 Jul 2013 14:01:25 WBPerson2970 Name_change: CGC_name: snpc-1.2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: snpc
    Allele: WBVar01449779
      WBVar00182567
      WBVar00182568
      WBVar00182569
      WBVar01498619
      WBVar01793935
      WBVar01793936
      WBVar01499774
      WBVar01339147
      WBVar00308029
      WBVar01339148
      WBVar01498679
      WBVar01900796
      WBVar00873793
      WBVar00873794
      WBVar00873795
      WBVar00873796
      WBVar00873797
      WBVar00873798
      WBVar00873799
      WBVar00873800
      WBVar00873801
      WBVar00873802
      WBVar00873803
      WBVar00873804
      WBVar00873805
      WBVar00873806
      WBVar00873807
      WBVar00873808
      WBVar00873809
      WBVar00873810
      WBVar00873811
      WBVar00873812
      WBVar00873813
      WBVar01913380
      WBVar00873814
      WBVar00873815
      WBVar01898797
      WBVar00873816
      WBVar00873817
      WBVar00252794
      WBVar00413180
      WBVar00413181
      WBVar00413182
      WBVar00413183
      WBVar00413184
      WBVar00413185
      WBVar00413186
      WBVar01833029
      WBVar01833030
    RNASeq_FPKM (74)
    GO_annotation: 00099345
      00099346
      00099347
      00099348
    Ortholog: WBGene00025353 Caenorhabditis briggsae From_analysis: OrthoMCL
            Inparanoid_8
            WormBase-Compara
      WBGene00057479 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00149077 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00140203 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00142519 Caenorhabditis brenneri From_analysis: OMA
      WBGene00217804 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00123410 Caenorhabditis japonica From_analysis: Inparanoid_8
      WBGene00222261 Brugia malayi From_analysis: WormBase-Compara
      CSP26.g9110 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g8580 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g16386 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g9714 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g7428 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP39.g17565 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g41 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g5120 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00277.g8348 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_II.g6507 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g11204 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00182.g6471 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_05951 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_005904 Caenorhabditis remanei From_analysis: WormBase-Compara
      Sp34_20086400 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g9295 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00246913 Onchocerca volvulus From_analysis: WormBase-Compara
      ZFIN:ZDB-GENE-040426-716 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-040426-1031 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
            PhylomeDB
      HGNC:11134 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
            Panther
            PhylomeDB
      MGI:1922877 Mus musculus From_analysis: EnsEMBL-Compara
            Panther
            PhylomeDB
      RGD:1304671 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Panther
            PhylomeDB
    Paralog: WBGene00015513 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00019894 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00017265 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in snRNA transcription by RNA polymerase II and snRNA transcription by RNA polymerase III. Predicted to be part of snRNA-activating protein complex. Is an ortholog of human SNAPC1 (small nuclear RNA activating complex polypeptide 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y39E4B.2
    Corresponding_transcript: Y39E4B.2.1
    Other_sequence: CBC07405_1
      MC00813
      CR01551
      MC01226
      CRC03671_1
    Associated_feature: WBsf651567
      WBsf666497
      WBsf667567
      WBsf978911
      WBsf994821
      WBsf227720
      WBsf227721
    Transcription_factor: WBTranscriptionFactor001093
  Experimental_info: RNAi_result: WBRNAi00056241 Inferred_automatically: RNAi_primary
      WBRNAi00056244 Inferred_automatically: RNAi_primary
      WBRNAi00113562 Inferred_automatically: RNAi_primary
      WBRNAi00036945 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1027728
      Expr1035625
      Expr1159728
      Expr2015957
      Expr2034192
    Drives_construct: WBCnstr00029862
    Construct_product: WBCnstr00029862
    Microarray_results (18)
    Expression_cluster (151)
    Interaction (11)
  Map_info: Map: III Position: 20.9838
    Positive: Positive_clone: Y39E4B Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene