WormBase Tree Display for Gene: WBGene00012715

WBGene00012715 SMap: S_parent: Sequence: Y39E4B
  Identity: Version: 2
    Name: CGC_name: snpc-1.2 Person_evidence: WBPerson2290
      Sequence_name: Y39E4B.2
      Molecular_name: Y39E4B.2
        Y39E4B.2.1
        CE21714
      Other_name: CELE_Y39E4B.2 Accession_evidence: NDB BX284603
      Public_name: snpc-1.2
    DB_info: Database: AceView gene 3O256
        WormQTL gene WBGene00012715
        WormFlux gene WBGene00012715
        NDB locus_tag CELE_Y39E4B.2
        Panther gene CAEEL|WormBase=WBGene00012715|UniProtKB=Q9U2K7
          family PTHR15131
        NCBI gene 176734
        RefSeq protein NM_067318.5
        TREEFAM TREEFAM_ID TF317804
        TrEMBL UniProtAcc Q9U2K7
        UniProt_GCRP UniProtAcc Q9U2K7
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 04 Jul 2013 14:01:25 WBPerson2970 Name_change: CGC_name: snpc-1.2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: snpc
    Allele: WBVar01449779
      WBVar00182567
      WBVar00182568
      WBVar00182569
      WBVar01498619
      WBVar01793935
      WBVar01793936
      WBVar01499774
      WBVar01339147
      WBVar00308029
      WBVar01339148
      WBVar01498679
      WBVar01900796
      WBVar00873793
      WBVar00873794
      WBVar00873795
      WBVar00873796
      WBVar00873797
      WBVar00873798
      WBVar00873799
      WBVar00873800
      WBVar00873801
      WBVar00873802
      WBVar00873803
      WBVar00873804
      WBVar00873805
      WBVar00873806
      WBVar00873807
      WBVar00873808
      WBVar00873809
      WBVar00873810
      WBVar00873811
      WBVar00873812
      WBVar00873813
      WBVar01913380
      WBVar00873814
      WBVar00873815
      WBVar01898797
      WBVar00873816
      WBVar00873817
      WBVar00252794
      WBVar00413180
      WBVar00413181
      WBVar00413182
      WBVar00413183
      WBVar00413184
      WBVar00413185
      WBVar00413186
      WBVar01833029
      WBVar01833030
    RNASeq_FPKM (74)
    GO_annotation: 00099345
      00099346
      00099347
      00099348
    Ortholog (30)
    Paralog: WBGene00015513 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00019894 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00017265 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in snRNA transcription by RNA polymerase II and snRNA transcription by RNA polymerase III. Predicted to be part of snRNA-activating protein complex. Is an ortholog of human SNAPC1 (small nuclear RNA activating complex polypeptide 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y39E4B.2
    Corresponding_transcript: Y39E4B.2.1
    Other_sequence: CBC07405_1
      MC00813
      CR01551
      MC01226
      CRC03671_1
    Associated_feature: WBsf651567
      WBsf666497
      WBsf667567
      WBsf978911
      WBsf994821
      WBsf227720
      WBsf227721
    Transcription_factor: WBTranscriptionFactor001093
  Experimental_info: RNAi_result: WBRNAi00056241 Inferred_automatically: RNAi_primary
      WBRNAi00056244 Inferred_automatically: RNAi_primary
      WBRNAi00113562 Inferred_automatically: RNAi_primary
      WBRNAi00036945 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1027728
      Expr1035625
      Expr1159728
      Expr2015957
      Expr2034192
    Drives_construct: WBCnstr00029862
    Construct_product: WBCnstr00029862
    Microarray_results (18)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:germline-precursors_embryo_enriched
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038168:lin-15B(n744)_upregulated
      WBPaper00038168:lin-35_upregulated
      WBPaper00040560:hpl-2_L3_upregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045050:drh-3 (ne4253)_downregulated
      WBPaper00045521:Oogenic
      WBPaper00045774:clk-1_downregulated
      WBPaper00046337:monosomal_N2_vs_daf-2_upregulated
      WBPaper00046338:body_muscle_unique
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00048611:MnCl2_downregulated
      WBPaper00048762:FOG-3_associated
      WBPaper00048988:neuron_expressed
      WBPaper00049498:npr-1(ur89)_regulated_6
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049905:Age_variant_expression
      WBPaper00050080:rbr-2(tm3141)_downregulated
      WBPaper00050193:met-2(n4256)set-25(n5021)_upregulated_L1
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050522:mafr-1(tm6082)_downregulated
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050726:starvation_regulated_LowSalt
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:NMDA-neuron_enriched
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053289:DREAM-target
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
      WBPaper00053321:embryo-to-L1_downregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
      WBPaper00053321:PGCs_enriched_NuGen
      WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
      WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Rapamycin-Allantoin_upregulated
      WBPaper00055626:pry-1(mu38)_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056034:pals-22(jy3)_downregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_downregulated_N2
      WBPaper00056290:hsp-6(mg585)_downregulated
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00057041:spc-1(cas971)_upregulated
      WBPaper00057041:unc-70(cas983)_upregulated
      WBPaper00058598:mex-1(or286)_downregulated
      WBPaper00058598:mex-3(eu149)_downregulated
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00058691:cfp-1(tm6369)_upregulated
      WBPaper00058691:sin-3(tm1276)_upregulated
      WBPaper00058948:PA14_upregulated
      WBPaper00059027:neuron-synapses_enriched
      WBPaper00059471:EGL-43_interacting
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00059739:hira-1(gk835598)_upregulated_L1
      WBPaper00059739:hira-1(gk835598)_upregulated_L4
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060445:ikb-1(nr2027)_upregulated_L4
      WBPaper00060445:nfki-1(cer1)_upregulated_L4
      WBPaper00060459:bcat-1(RNAi)_downregulated
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060886:met-2(n4256)_upregulated
      WBPaper00060886:spr-5(by101);met-2(n4256)_upregulated
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061007:HB101_downregulated
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061340:AVH_parent
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061527:T22D1.5-inx-14
      WBPaper00062056:lin-15B(n744)_upregulated
      WBPaper00062056:lin-35(n745)_upregulated
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062354:H.zoospora_6h_regulated
      WBPaper00064005:starvation_downregulated_aptf-1(gk794)_mRNA
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064107:lin-35(n745)_upregulated
      WBPaper00064107:lin-52(3A)_vs_lin-52(WT)_upregulated
      WBPaper00064315:mes-3(bn199)_downregulated_PGCs
      WBPaper00064716:paraquat_upregulated
      WBPaper00064871:hypoxia_upregulated_F2
      WBPaper00065149:lin-52(n771)_upregulated
      WBPaper00065258:anchor-cell_depleted
      WBPaper00065373:sek-1(km4)_downregulated_cisplatin
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      WBPaper00025032:cluster_1
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00035227:heat_shock_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00036130:mir-243_down_regulated
      WBPaper00036286:Pattern_B
      WBPaper00038427:lin-54_embryo_changed
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00040858:eQTL_regulated_reproductive
      WBPaper00040963:TA300_down
      WBPaper00041002:HF_3d_2.0mM_Down
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00048637:lin-35(n745)_starvation_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00056330:mrps-5(RNAi)_downregulated
      [cgc5767]:cluster_1
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MD_pd(41_min)
      [cgc5767]:expression_class_MD_pd(53_min)
      [cgc5767]:expression_class_SM
      [cgc5767]:expression_class_SMD
    Interaction (11)
  Map_info: Map: III Position: 20.9838
    Positive: Positive_clone: Y39E4B Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene