WormBase Tree Display for Gene: WBGene00011856

WBGene00011856 SMap: S_parent: Sequence: T20D3
  Identity: Version: 2
    Name: CGC_name: nspg-7.1 Person_evidence: WBPerson18244
      Sequence_name: T20D3.2
      Molecular_name: T20D3.2
        T20D3.2.1
        CE03671
      Other_name: CELE_T20D3.2 Accession_evidence: NDB BX284604
      Public_name: nspg-7.1
    DB_info: Database: AceView gene 4K94
        WormQTL gene WBGene00011856
        WormFlux gene WBGene00011856
        NDB locus_tag CELE_T20D3.2
        Panther gene CAEEL|WormBase=WBGene00011856|UniProtKB=O01254
          family PTHR34311
        NCBI gene 177760
        RefSeq protein NM_069239.7
        TREEFAM TREEFAM_ID TF315792
        TrEMBL UniProtAcc O01254
        UniProt_GCRP UniProtAcc O01254
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 10 Jul 2021 01:03:33 WBPerson1983 Name_change: CGC_name: nspg-7.1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nspg
    Allele (21)
    RNASeq_FPKM (74)
    Ortholog: WBGene00040400 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00146339 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00134881 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00078164 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00078914 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
      WBGene00190388 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      CBOVI.g8761 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g3951 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g16955 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g19278 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g7923 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g2042 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g13915 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g19381 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g15711 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g22178 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00213.g7161 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-T20D3.2 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g15239 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00133.g5226 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_10005 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_013408 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g02712 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_40346820 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g11288 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00279382 Pristionchus pacificus From_analysis: WormBase-Compara
    Paralog: WBGene00009883 Caenorhabditis elegans From_analysis: Panther
      WBGene00010793 Caenorhabditis elegans From_analysis: Panther
      WBGene00011592 Caenorhabditis elegans From_analysis: Panther
      WBGene00018951 Caenorhabditis elegans From_analysis: Panther
      WBGene00021321 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00021325 Caenorhabditis elegans From_analysis: Panther
      WBGene00022490 Caenorhabditis elegans From_analysis: Panther
      WBGene00021322 Caenorhabditis elegans From_analysis: Panther
      WBGene00017591 Caenorhabditis elegans From_analysis: Panther
      WBGene00021805 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
    Structured_description: Automated_description: Enriched in germ line; head mesodermal cell; intestine; mechanosensory neurons; and pharyngeal muscle cell based on proteomic; tiling array; RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; RNA-seq; and proteomic studies. Is affected by twenty-one chemicals including rotenone; mianserin; and D-glucose based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T20D3.2
    Corresponding_transcript: T20D3.2.1
    Other_sequence (14)
    Associated_feature: WBsf230552
  Experimental_info: RNAi_result: WBRNAi00053612 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1012787
      Expr1035222
      Expr1157170
      Expr2006284
      Expr2024501
    Drives_construct: WBCnstr00030332
    Construct_product: WBCnstr00030332
    Microarray_results (20)
    Expression_cluster (219)
    Interaction (60)
  Map_info: Positive: Positive_clone: T20D3 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: IV 4.18007
  Reference: WBPaper00058665
  Method: Gene