WormBase Tree Display for Gene: WBGene00011328

WBGene00011328 SMap: S_parent: Sequence: T01D3
  Identity: Version: 1
    Name: Sequence_name: T01D3.3
      Molecular_name: T01D3.3a
        T01D3.3a.1
        CE18162
        T01D3.3b
        CE41153
        T01D3.3c
        CE53123
        T01D3.3b.1
        T01D3.3c.1
      Other_name: CELE_T01D3.3 Accession_evidence: NDB BX284605
      Public_name: T01D3.3
    DB_info: Database: AceView gene 5O189
        WormQTL gene WBGene00011328
        WormFlux gene WBGene00011328
        NDB locus_tag CELE_T01D3.3
        Panther gene CAEEL|WormBase=WBGene00011328|UniProtKB=P90956
          family PTHR23259
        NCBI gene 179861
        RefSeq protein NM_073988.8
            NM_073989.5
            NM_001373148.4
        TrEMBL UniProtAcc P90956
            A0A486WY04
            Q7JL02
        UniProt_GCRP UniProtAcc P90956
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar01062971
      WBVar02113974
      WBVar01062972
      WBVar01062973
      WBVar01499886
      WBVar01062974
      WBVar01062975
      WBVar01062976
      WBVar01062977
      WBVar01062978
      WBVar01062979
      WBVar01062980
      WBVar01062981
      WBVar01062982
      WBVar01062983
      WBVar01462629
      WBVar01462630
      WBVar01462632
      WBVar01462633
      WBVar02144300
      WBVar01462634
      WBVar02024522
      WBVar02024523
      WBVar02024524
      WBVar00146243
      WBVar02024525
      WBVar01499196
      WBVar02115679
      WBVar01499197
      WBVar00601096
      WBVar00475464
      WBVar00475465
      WBVar00475466
      WBVar00475467
      WBVar00475468
      WBVar00475469
      WBVar00475470
      WBVar00317315
      WBVar00475471
      WBVar00475472
      WBVar00475473
      WBVar00475474
      WBVar00252911
      WBVar01975301
      WBVar01975302
      WBVar00277152
      WBVar00590609
      WBVar01484895
      WBVar01499621
      WBVar01870853
      WBVar00308276
      WBVar01870854
      WBVar01870855
      WBVar01870856
      WBVar00252578
      WBVar01870857
      WBVar01870858
      WBVar01870859
      WBVar01744085
      WBVar01744086
      WBVar01744087
      WBVar01744088
      WBVar01744089
      WBVar00013405
      WBVar01744090
      WBVar01744091
      WBVar01500212
      WBVar01500213
      WBVar01499299
      WBVar00255014
      WBVar01062950
      WBVar01062951
      WBVar01062952
      WBVar01062953
      WBVar01062954
      WBVar01499316
      WBVar01062955
      WBVar02062056
      WBVar01062956
      WBVar01062957
      WBVar02062057
      WBVar01062958
      WBVar02062058
      WBVar01062959
      WBVar01062960
      WBVar01842534
      WBVar01062961
      WBVar01842535
      WBVar01062962
      WBVar01062963
      WBVar01062964
      WBVar01062965
      WBVar01062966
      WBVar01062967
      WBVar01062968
      WBVar01062969
      WBVar01062970
    RNASeq_FPKM (74)
    GO_annotation: 00003676
      00003677
      00003678
      00003679
      00118575
      00118576
    Ortholog (20)
    Paralog: WBGene00009328 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00013481 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00013485 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00015076 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00016096 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00016097 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00023417 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable metal ion binding activity and serine-type endopeptidase inhibitor activity. Predicted to be involved in superoxide metabolic process. Predicted to be located in extracellular region. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T01D3.3a
      T01D3.3b
      T01D3.3c
    Corresponding_CDS_history: T01D3.3b:wp176
    Corresponding_transcript: T01D3.3a.1
      T01D3.3b.1
      T01D3.3c.1
    Other_sequence: JO467874.1
      Dviv_isotig14851
      CRC12492_1
      JI166072.1
      Dviv_isotig14852
      Oden_isotig21367
    Associated_feature: WBsf647477
      WBsf662034
      WBsf717275
      WBsf1001875
      WBsf1001876
      WBsf1001877
      WBsf1020758
      WBsf1020759
      WBsf232816
  Experimental_info: RNAi_result: WBRNAi00017969 Inferred_automatically: RNAi_primary
      WBRNAi00076629 Inferred_automatically: RNAi_primary
      WBRNAi00052124 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1010292
      Expr1034982
      Expr1155756
      Expr2005711
      Expr2023927
    Drives_construct: WBCnstr00030738
    Construct_product: WBCnstr00030738
    Microarray_results (32)
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037682:sma-2_sma-4_upregulated
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
      WBPaper00040285:H2S_12hr_downregulated
      WBPaper00040285:H2S_24hr_downregulated
      WBPaper00042215:wdr-23(tm1817)_upregulated
      WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
      WBPaper00042561:smg-2(RNAi)_downregulated
      WBPaper00042561:smgl-1(RNAi)_downregulated
      WBPaper00044037:eat-2_upregulated
      WBPaper00044260:1-methylnicotinamide_downregulated
      WBPaper00044426:rotenone_24h_downregulated
      WBPaper00044736:oscillating_dev_expression
      WBPaper00045017:blmp-1(tm548)_upregulated
      WBPaper00045316:prg-1_upregulated_L4
      WBPaper00045390:tunicamycin_downregulated
      WBPaper00045390:ubc-9(RNAi)_downregulated
      WBPaper00045417:128Q-huntingtin_downreglated
      WBPaper00045774:clk-1_upregulated
      WBPaper00045918:96h_infection_recovery_upregulated
      WBPaper00046121:ecdoderm_unique
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
      WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
      WBPaper00047131:daf-2(e1370)_upregulated_N2-background
      WBPaper00048611:MnCl2_upregulated
      WBPaper00049498:npr-1(ur89)_regulated_1
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:starvation_regulated_LowSalt
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00051352:Long-Term-Association-Memory_upregulated
      WBPaper00051404:alg-1(gk214)_upregulated
      WBPaper00051404:alg-2(ok304)_upregulated
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053295:lin-22(icb38)_upregulated
      WBPaper00053295:lin-22(ot269)_downregulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053402:cco-1(RNAi)_upregulated
      WBPaper00053402:his-3(RNAi)_upregulated
      WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_downregulated
      WBPaper00053771:up_at_dpy-7(e88)
      WBPaper00053810:clk-1(qm30)_upregulated
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00053810:isp-1(qm150)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00053810:sod-2(ok1030)_upregulated
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00055013:hmg-4(RNAi)_upregulated
      WBPaper00055013:spt-16(RNAi)_upregulated
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated
      WBPaper00055941:nuo-6(qm200)_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_upregulated_N2
      WBPaper00056165:MINA-1_interacting_mRNA
      WBPaper00056169:rrf-3(pk1426)_downregulated_L2
      WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056586:kri-1(ok1251);mpk-2(ok219)_downregulated
      WBPaper00056586:mpk-2(ok219)_downregulated
      WBPaper00056617:adr-1_upregulated_L4_transcript
      WBPaper00056826:hmc_biased
      WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
      WBPaper00057041:spc-1(cas971)_downregulated
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00057068:Cadmium_upregulated
      WBPaper00057068:ints-4(RNAi)_upregulated
      WBPaper00057068:numr-1(RNAi)_downregulated
      WBPaper00057068:numr-1(RNAi)_downregulated_Cadmium
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058678:DAF-12_downregulated_PVD
      WBPaper00058711:skn-1(lax188)_upregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059334:sacy-1(depletion)_regulated
      WBPaper00059567:olrn-1(ums9)_regulated
      WBPaper00059735:glucose_upregulated_lpin-1(RNAi)
      WBPaper00059735:glucose_upregulated_N2
      WBPaper00059739:hira-1(gk835598)_upregulated_L1
      WBPaper00059754:E.faecalis_OG1RF_upregulated
      WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060100:SiNP_upregulated_mRNA
      WBPaper00060445:ikb-1(nr2027)_downregulated_L4
      WBPaper00060445:nfki-1(cer1)_ikb-1(nr2027)_downregulated_L4
      WBPaper00060661:hypoxia_downregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00060911:prx-5(RNAi)_upregulated_mRNA
      WBPaper00061007:S.aquatilis_upregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061081:E.faecalis_upregulated_skpo-1(ok1640)
      WBPaper00061203:let-418(n3536)_upregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:ADE
      WBPaper00061340:ADEsh
      WBPaper00061340:ADF_AWB
      WBPaper00061340:ADL_parent
      WBPaper00061340:AMsh
      WBPaper00061340:AMso
      WBPaper00061340:ASG_AWA
      WBPaper00061340:ASH
      WBPaper00061340:AVE
      WBPaper00061340:AVH_parent
      WBPaper00061340:AWA
      WBPaper00061340:AWC
      WBPaper00061340:BAG
      WBPaper00061340:CEPsh
      WBPaper00061340:Excretory_duct_and_pore
      WBPaper00061340:Excretory_gland
      WBPaper00061340:F_U
      WBPaper00061340:Glia
      WBPaper00061340:hyp3
      WBPaper00061340:Neuroblast_ADE_ADA
      WBPaper00061340:Neuroblast_AFD_RMD
      WBPaper00061340:Neuroblast_HSN_PHB
      WBPaper00061340:OLL_parent
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
      WBPaper00061466:nath-10(icb99)_upregulated
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061527:ckr-1-T09B9.3
      WBPaper00061613:human-alpha-Synuclein(A53T)_upregulated
      WBPaper00061613:human-amyloid-beta_alpha-Synuclein(A53T)_upregulated
      WBPaper00061651:PHso_enriched
      WBPaper00061753:csr-1(tor159)_upregulated_20C
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00061995:mter-4(syb3662syb3403)_downregulated
      WBPaper00062156:jmjd-1.2(zr1010)_upregulated
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062193:hsf-1(RNAi)_upregulated
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062347:blmp-1(tm548)_upregulated
      WBPaper00062440:crh-1(n3315)_downregulated
      WBPaper00062440:crh-1(syb385)_downregulated
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00062497:xpf-1(tm2842)_upregulated
      WBPaper00062715:blmp-1(s71)_upregulated
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064156:lbp-3(overexpress)_upregulated
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064509:static-magnetic-field_upregulated
      WBPaper00064539:nhr-114(gk849)_upregulated
      WBPaper00064661:lpd-3(ok2138)_upregulated
      WBPaper00064871:hypoxia_downregulated_F3
      WBPaper00065029:cadmium_upregulated
      WBPaper00065074:glna(-)_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065215:microgravity_downregulated_DESeq2
      WBPaper00065331:100nM-ivermectin_downregulated
      WBPaper00065560:E.coli-HB101_downregulated_F3
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065749:endu-2(tm4977)_upregulated
      WBPaper00065749:Heat-Shock_downregulated_endu-2(tm4977)
      WBPaper00065749:Heat-Shock_downregulated_N2
      WBPaper00065841:30_1
      WBPaper00065841:30_2
      WBPaper00065841:33_1
      WBPaper00065841:34_0
      WBPaper00065841:34_1
      WBPaper00065841:64_0
      WBPaper00065841:66_0
      WBPaper00065841:79_2
      WBPaper00065926:pgph-2(overepxreesion)_upregulated_glucose
      WBPaper00065945:epidermis-rpoa-2(-)_downregulated_transcript
      WBPaper00065945:global-rpoa-2(-)_downregulated_transcript
      WBPaper00065975:P-body_vs_oocyte_depleted
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      cgc4489_group_17
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00029437:dcr-1_upregulated
      WBPaper00031003:0hr_muscle_depleted
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00032948:StarveUp1
      WBPaper00034661:AgNPs_downregulated
      WBPaper00034739:N2moreDR1350
      WBPaper00035227:heat_shock_regulated
      WBPaper00036123:Cadmium_regulated
      WBPaper00036130:mir-243_up_regulated
      WBPaper00037113:Diazinon_16C_regulated
      WBPaper00038060:SUMO-1_downregulated
      WBPaper00038172:crh-1null_up_regulated
      WBPaper00038172:tax-6null_up_regulated
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040963:Q100_down
      WBPaper00040963:Q200_down
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_prime
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00045673:colistin_upregulated
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00047070:N2_UV_upregulated
      WBPaper00047070:xpa-1_UV_upregulated
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00056330:mrps-5(RNAi)_upregulated
      WBPaper00057098:SiO2-nanoparticles_upregulated
    Interaction: WBInteraction000326292
      WBInteraction000346895
      WBInteraction000459034
      WBInteraction000553245
  Map_info: Positive: Positive_clone: T01D3 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 5.58461
  Reference: WBPaper00065331
  Method: Gene