WormBase Tree Display for Sequence: T01D3
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| T01D3 | DNA | T01D3 | 28416 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child | WBGene00169817 | 19651 | 19631 | |
| WBGene00011328 | 12711 | 19531 | ||||
| WBGene00011329 | 23713 | 21430 | ||||
| WBGene00005987 | 19800 | 21459 | ||||
| WBGene00198231 | 12533 | 12586 | ||||
| WBGene00011327 | 15835 | 14407 | ||||
| CDS_child (226) | ||||||
| Transcript | T01D3.4b | 19800 | 21459 | |||
| T01D3.8 | 19651 | 19631 | ||||
| T01D3.9 | 12533 | 12586 | ||||
| T01D3.2.1 | 15835 | 14407 | ||||
| T01D3.3a.1 | 12711 | 19531 | ||||
| T01D3.3b.1 | 13469 | 19529 | ||||
| T01D3.3c.1 | 13469 | 19525 | ||||
| T01D3.4a.1 | 19800 | 21457 | ||||
| T01D3.5.1 | 23713 | 21430 | ||||
| Nongenomic | yk273e12 | 21534 | 23702 | |||
| PCR_product (18) | ||||||
| Allele (397) | ||||||
| Oligo_set | Aff_T01D3.1 | 11084 | 11683 | |||
| Aff_T01D3.2 | 15331 | 14426 | ||||
| Aff_T01D3.3A | 18579 | 19402 | ||||
| Aff_T01D3.4 | 20513 | 21610 | ||||
| Aff_T01D3.5 | 23000 | 21718 | ||||
| Aff_T01D3.6 | 28009 | 28727 | ||||
| Feature_object (165) | ||||||
| Feature_data | T01D3:Polysome | 1 | 28416 | |||
| T01D3:TranscriptionallyActiveRegion | 1 | 28416 | ||||
| T01D3:ChIPSeqTF | 1 | 28416 | ||||
| T01D3:TRF | 1 | 28416 | ||||
| T01D3:Dust | 1 | 28416 | ||||
| T01D3:inverted | 1 | 28416 | ||||
| Homol_data (19) | ||||||
| Structure | From | Source | CHROMOSOME_V | |||
| Overlap_right | F35E12 | 28316 | ||||
| Overlap_left | F58G11 | |||||
| Clone_left_end | T01D3 | 1 | ||||
| F35E12 | 28316 | |||||
| Clone_right_end | F58G11 | 7451 | ||||
| DB_info | Database | EMBL | NDB_AC | Z81110 | ||
| NDB_SV | Z81110.2 | |||||
| DB_remark | [121025] Sequence correction: SNP 0 bases @ 25629 | |||||
| [121025] Sequence correction WBsf267807 : Insertion G1 bases from @ 15199 | ||||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | Steward CA | ||||
| From_laboratory | HX | |||||
| Date_directory | 960603 | |||||
| Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00000001 | |||||
| Visible | Clone | T01D3 | ||||
| Properties | Genomic_canonical | |||||
| Checksum | MD5 | db0a01fa8f3e62cbc3ff2d158d7f6cd3 | ||||
| Status | Finished | 03 Jun 1996 00:00:00 | ||||
| Submitted | 21 Oct 1996 00:00:00 | |||||
| Annotated | 17 Feb 1997 00:00:00 | |||||
| Map | Sequence-V | Ends | Left | 7784 | ||
| Right | 7813 | |||||
| Interpolated_map_position | V | 5.58448 | ||||
| Assembly_tags | Finished Left | 1 | 1 | |||
| Clone left end | 1 | 4 | ||||
| 28316 | 28319 | F35E12 | ||||
| Clone right end | 7448 | 7451 | F58G11 | |||
| Finished Right | 28416 | 28416 | ||||
| annotation | 24311 | 24321 | single read only in loop of inverted repeat | |||
| 24322 | 24335 | region within loop of inverted repeat. Covered by 2 reads, but data is not 100 %, although we feel that this sequence is correct. | ||||
| Method | Genomic_canonical |
