WormBase Tree Display for Gene: WBGene00010882
expand all nodes | collapse all nodes | view schema
| WBGene00010882 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 4 | |||||||
| Name | CGC_name | atg-7 | Paper_evidence | WBPaper00028973 | |||||
| Person_evidence | WBPerson649 | ||||||||
| Sequence_name | M7.5 | ||||||||
| Molecular_name | M7.5 | ||||||||
| M7.5.1 | |||||||||
| CE18887 | |||||||||
| Other_name | atgr-7 | ||||||||
| CELE_M7.5 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | atg-7 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 27 Apr 2006 11:26:11 | WBPerson2970 | Name_change | CGC_name | atgr-7 | ||||
| 3 | 15 Mar 2007 08:29:05 | WBPerson2970 | Name_change | Other_name | atg-7 | ||||
| 4 | 29 Feb 2008 11:29:00 | WBPerson2970 | Name_change | CGC_name | atg-7 | ||||
| Other_name | atgr-7 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | atg | ||||||||
| Allele (45) | |||||||||
| Strain | WBStrain00008599 | ||||||||
| WBStrain00051662 | |||||||||
| WBStrain00051664 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (22) | |||||||||
| Contained_in_operon | CEOP4404 | ||||||||
| Ortholog (39) | |||||||||
| Paralog | WBGene00000142 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00004341 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006699 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006700 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006735 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00020184 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00018357 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | atg-7 encodes an E1 ubiquitin-activating-like enzyme orthologous to the autophagic budding yeast protein Apg7p; ATG-7 is required for normal dauer morphogenesis and autophagy in daf-2 mutant animals. | Paper_evidence | WBPaper00006070 | |||||
| WBPaper00028912 | |||||||||
| WBPaper00031504 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson324 | |||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 16 Mar 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable Atg12 activating enzyme activity and Atg8 activating enzyme activity. Involved in several processes, including dauer larval development; determination of adult lifespan; and positive regulation of autophagosome assembly. Predicted to be located in phagophore assembly site. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 31. Is an ortholog of human ATG7 (autophagy related 7). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0070412 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16935) | ||||
| Molecular_info | Corresponding_CDS | M7.5 | |||||||
| Corresponding_transcript | M7.5.1 | ||||||||
| Other_sequence (35) | |||||||||
| Associated_feature | WBsf652185 | ||||||||
| WBsf981819 | |||||||||
| WBsf997759 | |||||||||
| WBsf230816 | |||||||||
| Experimental_info | RNAi_result (35) | ||||||||
| Expr_pattern | Expr1021948 | ||||||||
| Expr1034772 | |||||||||
| Expr1154760 | |||||||||
| Expr2009495 | |||||||||
| Expr2027732 | |||||||||
| Drives_construct | WBCnstr00037850 | ||||||||
| Construct_product | WBCnstr00006221 | ||||||||
| WBCnstr00006228 | |||||||||
| WBCnstr00037850 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (92) | |||||||||
| Interaction (82) | |||||||||
| WBProcess | WBbiopr:00000003 | ||||||||
| Map_info | Map | IV | Position | 4.82542 | Error | 0.000636 | |||
| Positive | Positive_clone | M7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (47) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
