WormBase Tree Display for Gene: WBGene00020184
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| WBGene00020184 | SMap | S_parent | Sequence | T03F1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | uba-5 | Paper_evidence | WBPaper00042074 | |||||
| Sequence_name | T03F1.1 | ||||||||
| Molecular_name | T03F1.1 | ||||||||
| T03F1.1.1 | |||||||||
| CE13096 | |||||||||
| T03F1.1.2 | |||||||||
| T03F1.1.3 | |||||||||
| Other_name | CELE_T03F1.1 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | uba-5 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 04 Jun 2013 14:47:04 | WBPerson2970 | Name_change | CGC_name | uba-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | uba | ||||||||
| Allele (41) | |||||||||
| Strain | WBStrain00033116 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (35) | |||||||||
| Paralog | WBGene00000142 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00004341 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006699 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006700 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006735 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00010882 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00018357 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Enables UFM1 activating enzyme activity and ubiquitin conjugating enzyme binding activity. Involved in determination of adult lifespan; reproduction; and stress response to metal ion. Predicted to be located in cytosol. Used to study early infantile epileptic encephalopathy. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 24 and developmental and epileptic encephalopathy 44. Is an ortholog of human UBA5 (ubiquitin like modifier activating enzyme 5). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:0050709 | Homo sapiens | Paper_evidence | WBPaper00050013 | ||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 27 Sep 2020 00:00:00 | ||||||||
| Potential_model | DOID:0080424 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:23230) | |||||
| DOID:0111615 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:23230) | ||||||
| Models_disease_asserted | WBDOannot00000813 | ||||||||
| Molecular_info | Corresponding_CDS | T03F1.1 | |||||||
| Corresponding_transcript | T03F1.1.1 | ||||||||
| T03F1.1.2 | |||||||||
| T03F1.1.3 | |||||||||
| Other_sequence (72) | |||||||||
| Associated_feature | WBsf643164 | ||||||||
| WBsf217452 | |||||||||
| WBsf217453 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00116513 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00107652 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00052280 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076636 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004114 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00052277 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00035091 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1010853 | ||||||||
| Expr1038778 | |||||||||
| Expr1155909 | |||||||||
| Expr2017697 | |||||||||
| Expr2035835 | |||||||||
| Drives_construct | WBCnstr00017406 | ||||||||
| WBCnstr00025317 | |||||||||
| Construct_product | WBCnstr00025317 | ||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (116) | |||||||||
| Interaction (123) | |||||||||
| Map_info | Map | I | Position | -1.95366 | |||||
| Positive | Positive_clone | T03F1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00044965 | |||||||||
| WBPaper00045692 | |||||||||
| WBPaper00050013 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
