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WormBase Tree Display for Gene: WBGene00009628

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Name Class

WBGene00009628SMapS_parentSequenceF42D1
IdentityVersion2
NameCGC_nametatn-1Person_evidenceWBPerson2977
Sequence_nameF42D1.2
Molecular_nameF42D1.2
F42D1.2.1
CE10298
Other_nameCELE_F42D1.2Accession_evidenceNDBBX284606
Public_nametatn-1
DB_infoDatabase (13)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:50WBPerson1971EventImportedInitial conversion from CDS class of WS125
226 Nov 2009 11:16:28WBPerson9133Name_changeCGC_nametatn-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtatn
Allele (54)
StrainWBStrain00000172
WBStrain00037460
Component_of_genotypeWBGenotype00000122
WBGenotype00000127
RNASeq_FPKM (74)
GO_annotation (16)
Ortholog (40)
ParalogWBGene00009232Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00010984Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00011436Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00016333Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptiontatn-1 encodes a putative tyrosine aminotransferase, orthologous to human TAT (OMIM:276600, mutated in type II tyrosinemia); tatn-1 is expressed in larval and adult pharynx, hypodermis, body wall muscle, and intestine, and in adult vulval muscle and reproductive system; tatn-1 is required for the tyrosinemic phenotype of fah-1(RNAi) animals.Paper_evidenceWBPaper00006525
WBPaper00031006
WBPaper00031468
Curator_confirmedWBPerson1843
WBPerson567
Date_last_updated14 Dec 2009 00:00:00
Automated_descriptionPredicted to enable L-tyrosine:2-oxoglutarate aminotransferase activity. Involved in dauer entry. Human ortholog(s) of this gene implicated in tyrosinemia type II. Is an ortholog of human TAT (tyrosine aminotransferase).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0050725Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:11573)
DOID:9275Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:11573)
Molecular_infoCorresponding_CDSF42D1.2
Corresponding_transcriptF42D1.2.1
Other_sequenceHGC01683_1
HG02564
EX914830.1
FG977608.1
EX910522.1
CJC06160_1
Tcol_contig04353
AE03905
EX910863.1
GP00093
FG973158.1
FK807763.1
SS01641
SS01528
EX911880.1
ES413711.1
FG977951.1
FG973304.1
EX912267.1
HG11941
CBC01856_1
HBC00915_1
FG976564.1
GPC01728_1
MI01975
GW408773.1
FG974082.1
FK804442.1
Dviv_isotig08180
FG974477.1
GPC00198_1
EX910921.1
EY467425.1
PPC01526_1
FK808836.1
PT02669
CSC02077_1
PP00161
FG972562.1
FK807127.1
EX012294.1
HBC11532_1
FF681645.1
FG977208.1
ES743996.1
SSC00007_1
ES413719.1
FG979017.1
ACC03612_1
FK809210.1
HBC14560_1
FK806459.1
ES413755.1
EX913924.1
EX012064.1
FF680746.1
ES411035.1
EX911937.1
FF679833.1
FG977635.1
AM744930.1
FG972231.1
FK801722.1
SR02628
CR07357
PT02445
XI03342
CR10773
EY471457.1
HBC18034_1
EX008784.1
MIC00032_1
FG974193.1
PSC02564_1
FG979737.1
FF681708.1
EX912416.1
PTC01299_1
AM744344.1
FG980226.1
Acan_isotig03393
TDC02633_1
Hbac_isotig01222
Dviv_isotig08179
FG976531.1
FG978978.1
HBC23947_1
FG974041.1
JI170775.1
FG974225.1
Dviv_isotig08181
AYC02152_1
CRC11718_1
FG979434.1
FG979675.1
Acan_isotig04758
Oden_isotig00022
EX008229.1
MI00858
Acan_isotig03392
FG980796.1
EX008360.1
FG978402.1
Oden_isotig00005
EX013078.1
FG972563.1
FG979129.1
FG974763.1
FG975124.1
PT01899
EX915797.1
FK808230.1
EX012942.1
CBC07252_1
FG974690.1
FG978830.1
ES741890.1
FF680703.1
EX914996.1
FG978478.1
FK802913.1
FG979370.1
Tcir_isotig04742
FG977043.1
FD514170.1
ES740098.1
ES413693.1
Dviv_isotig08178
FK805066.1
FK802441.1
AE01310
EX011669.1
GP00205
PTC02192_1
GPC02896_1
ES742049.1
GPC02897_1
AYC02281_1
FG978673.1
XIC02889_1
SSC02057_1
Associated_feature (11)
Experimental_infoRNAi_resultWBRNAi00113315Inferred_automaticallyRNAi_primary
WBRNAi00113142Inferred_automaticallyRNAi_primary
WBRNAi00117421Inferred_automaticallyRNAi_primary
WBRNAi00117425Inferred_automaticallyRNAi_primary
WBRNAi00032137Inferred_automaticallyRNAi_primary
WBRNAi00113086Inferred_automaticallyRNAi_primary
WBRNAi00047093Inferred_automaticallyRNAi_primary
Expr_patternExpr6041
Expr7955
Expr11472
Expr1016315
Expr1034206
Expr1150957
Expr2017305
Expr2035440
Drives_constructWBCnstr00002453
WBCnstr00018685
WBCnstr00032042
Construct_productWBCnstr00018685
WBCnstr00020586
WBCnstr00032042
Regulate_expr_cluster (2)
Microarray_results (17)
Expression_cluster (221)
Interaction (66)
Map_infoMapXPosition21.333Error0.00501
PositivePositive_cloneF42D1Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (11)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene