WormBase Tree Display for Gene: WBGene00009059

WBGene00009059 SMap: S_parent: Sequence: F22E12
  Identity: Version: 2
    Name: CGC_name: chw-1
      Sequence_name: F22E12.2
      Molecular_name: F22E12.2
        F22E12.2.1
        CE05696
      Other_name: CELE_F22E12.2 Accession_evidence: NDB BX284605
      Public_name: chw-1
    DB_info: Database: AceView gene 5K943
        WormQTL gene WBGene00009059
        WormFlux gene WBGene00009059
        NDB locus_tag CELE_F22E12.2
        Panther gene CAEEL|WormBase=WBGene00009059|UniProtKB=Q19739
          family PTHR24072
        NCBI gene 184848
        RefSeq protein NM_073285.2
        TREEFAM TREEFAM_ID TF321839
        TrEMBL UniProtAcc Q19739
        UniProt_GCRP UniProtAcc Q19739
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:49 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 05 Jan 2005 13:10:39 WBPerson2970 Name_change: CGC_name: chw-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: chw
    Allele (28)
    Strain: WBStrain00031576
    RNASeq_FPKM (74)
    GO_annotation (20)
    Ortholog (38)
    Paralog: WBGene00000390 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00000424 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00003239 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00004287 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00004357 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00019544 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00022177 Caenorhabditis elegans From_analysis: Panther
      WBGene00012532 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Involved in establishment or maintenance of cell polarity and vulval development. Predicted to be located in plasma membrane. Expressed in several structures, including P3.pa; P3.pp; P4.pa; P4.pp; and P8.pa. Is an ortholog of human RHOU (ras homolog family member U). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F22E12.2
    Corresponding_transcript: F22E12.2.1
    Other_sequence: Oden_isotig21620
      CR01151
      Dviv_isotig24876
      Oden_isotig24504
      CRC02711_1
    Associated_feature: WBsf661629
  Experimental_info: RNAi_result: WBRNAi00013757 Inferred_automatically: RNAi_primary
      WBRNAi00108141 Inferred_automatically: RNAi_primary
      WBRNAi00031278 Inferred_automatically: RNAi_primary
      WBRNAi00094825 Inferred_automatically: RNAi_primary
      WBRNAi00045328 Inferred_automatically: RNAi_primary
      WBRNAi00107627 Inferred_automatically: RNAi_primary
      WBRNAi00108142 Inferred_automatically: RNAi_primary
      WBRNAi00108140 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr12413
      Expr1020601
      Expr1033950
      Expr1149251
      Expr2010008
      Expr2028249
    Drives_construct: WBCnstr00020742
      WBCnstr00032492
    Construct_product: WBCnstr00032492
    Microarray_results (19)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_upregulated
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:germline-precursors_embryo_enriched
      WBPaper00037950:germline-precursors_embryo_SelectivelyEnriched
      WBPaper00037950:hypodermis_CoreEnriched
      WBPaper00037950:hypodermis_embryo_enriched
      WBPaper00037950:hypodermis_embryo_SelectivelyEnriched
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:hypodermis_larva_enriched
      WBPaper00037950:hypodermis_larva_SelectivelyEnriched
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038168:lin-15B(n744)_downregulated
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00044736:flat_dev_expression
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045314:S.aureus-induced_hlh-30(tm1978)
      WBPaper00045417:128Q-huntingtin_downreglated
      WBPaper00045571:germline-ablation_upregulated
      WBPaper00046121:ecdoderm_unique
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00047131:daf-2(e1370)_upregulated_N2-background
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
      WBPaper00049942:HeatShock_upregulated_hsf-1(+)
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:seam_expressed
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053302:alovudine_24h_regulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053388:dauer_regulated_Cluster5
      WBPaper00053606:N2_vs_elt-2(ca15)_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Psora_downregulated
      WBPaper00055897:heat-shock_upregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00057041:unc-70(cas983)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058691:set-2(bn129)_upregulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059728:5ug_cholesterol_upregulated
      WBPaper00059728:20ug_cholesterol_upregulated
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00061007:S.aquatilis_upregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:hyp4_hyp5_hyp6
      WBPaper00061340:hyp7_AB_lineage
      WBPaper00061340:hyp7_C_lineage
      WBPaper00061340:P_cell
      WBPaper00061405:S.aureus_downregulated_starvation
      WBPaper00061527:lon-8-C18D11.1_11630
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062184:PA14_downregulated
      WBPaper00064005:starvation_downregulated_N2_mRNA
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064505:tamoxifen_downregulated
      WBPaper00064721:fasn-1(g14)_downregulated_starved
      WBPaper00064769:him-17(me24)_upregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065272:dhgd-1(tm6671)_downregulated
      WBPaper00065835:Day5_vs_Day1_downregulated
      WBPaper00065835:Day11_vs_Day1_downregulated
      WBPaper00065835:mtH2S-AP39-D0-treatment_upregulated_Day11
      WBPaper00065841:17_0
      WBPaper00065841:26_2
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026980:intestine_enriched
      WBPaper00035084:embryo_enriched_AIN-2_IP
      WBPaper00035084:L1_enriched_AIN-2_IP
      WBPaper00035084:L2_enriched_AIN-2_IP
      WBPaper00035084:L3_enriched_AIN-2_IP
      WBPaper00035084:L4_enriched_AIN-2_IP
      WBPaper00036130:mir-243_up_regulated
      WBPaper00036286:Pattern_I
      WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2up
      WBPaper00040963:Q100_down
      WBPaper00040963:Q200_down
      WBPaper00041174:environmental
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_and_environmental
      WBPaper00041207:CE_dauer_down
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00045673:colistin_upregulated
      WBPaper00046083:pmk-1(km25)_OP50_downregulated
      WBPaper00047070:N2_starvation_downregulated
      WBPaper00047070:N2_UV_downregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00048989:N2_rapamycin_upregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
    Interaction: WBInteraction000031287
      WBInteraction000032007
      WBInteraction000343952
      WBInteraction000441076
      WBInteraction000534753
      WBInteraction000534754
      WBInteraction000563423
  Map_info: Map: V Position: 2.56276 Error: 0.001499
    Positive: Positive_clone: F22E12 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4678
        5046
    Pseudo_map_position
  Reference (11)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene