WormBase Tree Display for Gene: WBGene00008302

WBGene00008302 SMap: S_parent: Sequence: C54D10
  Identity: Version: 2
    Name: CGC_name: pals-38 Person_evidence: WBPerson260
      Sequence_name: C54D10.8
      Molecular_name: C54D10.8a
        WP:CE45432
        CE45432
        C54D10.8b
        WP:CE47766
        CE47766
        C54D10.8a.1
        C54D10.8b.1
      Other_name: CELE_C54D10.8 Accession_evidence: NDB BX284605
      Public_name: pals-38
    DB_info: Database: AceView gene 5M922
        WormQTL gene WBGene00008302
        WormFlux gene WBGene00008302
        NDB locus_tag CELE_C54D10.8
        NCBI gene 183785
        RefSeq mRNA NM_073720.3
            NM_001276943.1
          protein NP_001263872.1
            NP_506121.3
            NM_001276943.3
            NM_073720.5
        UniProt UniProtAcc J7RNJ4
            Q18826
        TrEMBL UniProtAcc J7RNJ4
            Q18826
        UniProt_GCRP UniProtAcc Q18826
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:49 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 26 Oct 2016 09:42:35 WBPerson2970 Name_change: CGC_name: pals-38
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pals
    Allele: WBVar00472821
      WBVar00008560
      WBVar00008565
      WBVar00590003
      WBVar00008570
      WBVar00590004
      WBVar01975034
      WBVar00590005
      WBVar01975035
      WBVar00008575
      WBVar00008580
      WBVar00008585
      WBVar00008590
      WBVar00008595
      WBVar00008600
      WBVar00008605
      WBVar01499547
      WBVar00008610
      WBVar00008615
      WBVar00008620
      WBVar00008625
      WBVar00008630
      WBVar00008635
      WBVar02122673
      WBVar00008640
      WBVar00008645
      WBVar00008650
      WBVar00008655
      WBVar00008660
      WBVar00008665
      WBVar00008670
      WBVar00008675
      WBVar00008680
      WBVar01590286
      WBVar01590287
      WBVar01590288
      WBVar01590289
      WBVar01590290
      WBVar02104673
      WBVar01590291
      WBVar01590292
      WBVar02104674
      WBVar02104675
      WBVar01867895
      WBVar01867896
      WBVar01867897
      WBVar01867898
      WBVar01743689
      WBVar02115553
      WBVar00008430
      WBVar00008435
      WBVar00008440
      WBVar00008445
      WBVar02024412
      WBVar02090906
      WBVar02121271
      WBVar00008450
      WBVar02090907
      WBVar02121272
      WBVar02090908
      WBVar02090909
      WBVar00008455
      WBVar00008460
      WBVar01808772
      WBVar01808773
      WBVar01808774
      WBVar00008465
      WBVar01808775
      WBVar01808776
      WBVar00008470
      WBVar00008475
      WBVar01786647
      WBVar00008480
      WBVar00008485
      WBVar01500212
      WBVar00008490
      WBVar01055016
      WBVar01500213
      WBVar01055017
      WBVar01055018
      WBVar01055019
      WBVar00008495
      WBVar01055020
      WBVar01055021
      WBVar01055022
      WBVar00008500
      WBVar01499299
      WBVar01055023
      WBVar01055024
      WBVar01055025
      WBVar00008505
      WBVar01055026
      WBVar01055027
      WBVar02124250
      WBVar01055028
      WBVar00008510
      WBVar01055029
      WBVar00008515
      WBVar00008520
      WBVar00008525
      WBVar01499316
      WBVar00008530
      WBVar00008535
      WBVar00008540
      WBVar02124823
      WBVar02124824
      WBVar00008545
      WBVar00008550
      WBVar00008555
    RNASeq_FPKM (74)
    Ortholog (24)
    Paralog: WBGene00044787 Caenorhabditis elegans From_analysis: TreeFam
    Structured_description: Automated_description: Enriched in body wall muscle cell; intestine; neurons; and retrovesicular ganglion based on tiling array; RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by thirteen chemicals including Mercuric Chloride; Psoralens; and allantoin based on microarray and RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C54D10.8a
      C54D10.8b
    Corresponding_CDS_history: C54D10.8:wp109
      C54D10.8:wp220
    Corresponding_transcript: C54D10.8a.1
      C54D10.8b.1
    Associated_feature: WBsf234680
      WBsf234681
  Experimental_info: RNAi_result: WBRNAi00012386 Inferred_automatically: RNAi_primary
      WBRNAi00043141 Inferred_automatically: RNAi_primary
      WBRNAi00070078 Inferred_automatically: RNAi_primary
      WBRNAi00030137 Inferred_automatically: RNAi_primary
      WBRNAi00102072 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1014777
      Expr1147113
      Expr2014709
    Drives_construct: WBCnstr00033070
    Construct_product: WBCnstr00033070
    Microarray_results (17)
    Expression_cluster: WBPaper00032425:up_in_lin-35
      WBPaper00032528:L3_depleted
      WBPaper00037950:A-class-motor-neurons_embryo_enriched
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_larva_enriched
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:dopaminergic-neurons_larva_enriched
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038168:lin-15B(n744)_upregulated
      WBPaper00038168:lin-35_upregulated
      WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
      WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00040560:hpl-2_L3_upregulated
      WBPaper00042194:nhr-114(RNAi)_downregulated
      WBPaper00042215:wdr-23(tm1817)_upregulated
      WBPaper00042561:smgl-2(RNAi)_upregulated
      WBPaper00044316:HgCl2_20uM_upregulated
      WBPaper00044638:daf-2(e1370)rsks-1(ok1255)_regulated
      WBPaper00045257:bar-1(ga80)_upregulated
      WBPaper00045401:N.parisii_8h_upregulated
      WBPaper00045401:N.parisii_16h_upregulated
      WBPaper00045401:N.parisii_30h_upregulated
      WBPaper00045401:N.parisii_40h_upregulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045774:clk-1_upregulated
      WBPaper00045934:wrn-1(gk99)_downregulated
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
      WBPaper00048971:daf-16(mgDf50)_downregulated_L1
      WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_24-cell-embryo
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:daf-2(e1370)_vs_daf-2(e1370);mir-34(gk437)_regulated_dauer_25C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050504:hrp-2(RNAi)_upregulated
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00051137:N.parisii-virus_upregulated_N2
      WBPaper00051137:Orsay-virus_upregulated_N2
      WBPaper00051137:Orsay-virus_upregulated_rde-1(ne219)
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053020:OrsayVirus-infection_upregulated
      WBPaper00053020:OrsayVirus-infection_upregulated_microarray
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053321:embryo-to-L1_upregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
      WBPaper00053321:lin-15B(RNAi)_downregulated_starved-L1_Truseq
      WBPaper00053321:mes-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:mes-4(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053388:dauer_regulated_Cluster4
      WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15);elt-7(tm840)_doenregulated
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00055013:hmg-3(bar24)_upregulated
      WBPaper00055354:Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055971:nhl-2(ok818)_20C_downregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056034:pals-25(jy9)_upregulated
      WBPaper00056090:E.faecalis_upregulated_N2
      WBPaper00056167:ifo-1(kc2)_downregulated
      WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
      WBPaper00056218:daf-16(mu86)_upregulated_Day7
      WBPaper00056290:hsp-6(mg585)_upregulated
      WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00056809:smn-1(ok355)_upregulated
      WBPaper00057068:ints-4(RNAi)_upregulated
      WBPaper00057068:ints-4(RNAi)_upregulated_Cadmium
      WBPaper00057162:meg-3_meg-4_upregulated_sRNA
      WBPaper00057254:MWCNT_upregulated_mRNA
      WBPaper00058711:paraquat_downregulated
      WBPaper00058711:skn-1(lax188)_upregulated
      WBPaper00058711:wdr-5(ok1417)_downregulated
      WBPaper00058955:heatshock_upregulated_CE
      WBPaper00059426:SiO2-nanoparticles_downregulated
      WBPaper00059754:E.faecalis_OG1RF_upregulated
      WBPaper00059895:wounding_upregulated
      WBPaper00059987:Wounding_upregulated
      WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060871:M.humicola-infection_12h_regulated
      WBPaper00060886:spr-5(by101);met-2(n4256)_upregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061274:hypergravity_15xg_downregulated
      WBPaper00061319:pnp-1(jy90)_upregulated
      WBPaper00061319:pnp-1(jy121)_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061527:C17H1.6-C17H1.13
      WBPaper00061699:daf-18(ok480)_downregulated
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00062056:lin-15B(n744)_upregulated
      WBPaper00062056:lin-15B(we23)_upregulated
      WBPaper00062056:lin-35(n745)_upregulated
      WBPaper00062056:lin-36(we31)_upregulated
      WBPaper00062056:lin-37(n758)_upregulated
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062325:etr-1(lq61)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062345:bortezomib_4h_upregulated_N2
      WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
      WBPaper00062497:xpf-1(tm2842)_downregulated
      WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
      WBPaper00062587:lsl-1(ljm1)_downregulated
      WBPaper00062587:lsl-1(tm4769)_downregulated
      WBPaper00062672:let-418(n3536)dcp-66(RNAi)_upregulated
      WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064107:lin-35(n745)_upregulated
      WBPaper00064130:Beta-Amyloid_24h_upregulated_mRNA
      WBPaper00064315:mes-3(bn199)_upregulated_EGCs
      WBPaper00064315:mes-3(bn199)_upregulated_PGCs
      WBPaper00064315:mes-4(bn73)_upregulated_EGCs
      WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
      WBPaper00064473:ets-4(rrr16)_upregulated
      WBPaper00064509:static-magnetic-field_upregulated
      WBPaper00064532:pals-22(jy3)_upregulated
      WBPaper00064532:pals-25(icb98)_upregulated
      WBPaper00064532:pals-25(jy111)_upregulated
      WBPaper00064661:lpd-3(ok2138)_upregulated
      WBPaper00065086:JU1400_N.ausubeli_regulated
      WBPaper00065086:JU1400_N.ferruginous_regulated
      WBPaper00065086:JU1400_N.ironsii_regulated
      WBPaper00065086:JU1400_N.parisii_regulated
      WBPaper00065086:N2_N.ausubeli_regulated
      WBPaper00065086:N2_N.ferruginous_regulated
      WBPaper00065086:N2_N.ironsii_regulated
      WBPaper00065086:N2_N.parisii_regulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065149:lin-52(n771)_upregulated
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065759:dot-1.1(knu339)_upregulated
      WBPaper00065841:21_0
      WBPaper00065841:21_1
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00065995:M.humicola-extract_downregulated_N2
      WBPaper00066204:CdCl2_upregulated_mRNA
      WBPaper00066232:ash-2(RNAi)_downregulated_WT
      WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
      WBPaper00066232:hsf-1(RNAi)_upregulated_WT
      cgc4489_group_9
      WBPaper00024393:strongly_regulated_dauer_genes
      WBPaper00024671:AFD_vs_AWB_downregulated
      WBPaper00025141:unc-4::GFP_Enriched_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00030839:Embryo_A_Class
      WBPaper00032165:differentially_expressed_with_age_medoid_2
      WBPaper00035227:heat_shock_regulated
      WBPaper00036286:Pattern_H
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_regulated_old
      WBPaper00040963:Q100_up
      WBPaper00040963:Q200_up
      WBPaper00041609:hpl-1_hpl-2_upregulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00042574:rde-1(ne219)_OrsayVirus_upregulated
      WBPaper00045673:colistin_upregulated
      WBPaper00047070:xpa-1_UV_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00053236:daf-16(mgDF50)_regulated_Starved
      WBPaper00053236:Starvation_regulated_N2
    Interaction: WBInteraction000151398
      WBInteraction000329309
      WBInteraction000373640
      WBInteraction000431455
  Map_info: Positive: Positive_clone: C54D10 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 4.23785
  Reference: WBPaper00062345
  Method: Gene