WormBase Tree Display for Gene: WBGene00007990

WBGene00007990 SMap: S_parent: Sequence: C37A5
  Identity: Version: 2
    Name: CGC_name: fipr-23 Person_evidence: WBPerson168
      Sequence_name: C37A5.4
      Molecular_name: C37A5.4
        C37A5.4.1
        CE17530
      Other_name: CELE_C37A5.4 Accession_evidence: NDB BX284601
      Public_name: fipr-23
    DB_info: Database: AceView gene 1O746
        WormQTL gene WBGene00007990
        WormFlux gene WBGene00007990
        NDB locus_tag CELE_C37A5.4
        Panther gene CAEEL|WormBase=WBGene00007990|UniProtKB=O62091
          family PTHR36521
        NCBI gene 173283
        RefSeq protein NM_061068.5
        TREEFAM TREEFAM_ID TF322357
        TrEMBL UniProtAcc O62091
        UniProt_GCRP UniProtAcc O62091
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:48 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 03 Apr 2007 10:48:52 WBPerson2970 Name_change: CGC_name: fipr-23
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fipr
    Allele (14)
    RNASeq_FPKM (74)
    GO_annotation: 00036935
    Ortholog: WBGene00140729 Caenorhabditis brenneri From_analysis: Inparanoid_8
      chrI_pilon.g2862 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog: WBGene00000560 Caenorhabditis elegans From_analysis: Panther
      WBGene00007682 Caenorhabditis elegans From_analysis: Panther
      WBGene00007989 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
      WBGene00007992 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00014698 Caenorhabditis elegans From_analysis: Panther
      WBGene00014699 Caenorhabditis elegans From_analysis: Panther
      WBGene00045211 Caenorhabditis elegans From_analysis: Panther
      WBGene00194727 Caenorhabditis elegans From_analysis: Panther
      WBGene00014700 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Predicted to be involved in innate immune response. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C37A5.4
    Corresponding_transcript: C37A5.4.1
    Associated_feature: WBsf220584
      WBsf220585
  Experimental_info: RNAi_result: WBRNAi00042098 Inferred_automatically: RNAi_primary
      WBRNAi00003119 Inferred_automatically: RNAi_primary
      WBRNAi00042097 Inferred_automatically: RNAi_primary
      WBRNAi00002036 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1146098
      Expr2011780
      Expr2030017
    Microarray_results (18)
    Expression_cluster: WBPaper00032528:L3_depleted
      WBPaper00036231:long-telomeres_upregulated
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
      WBPaper00040560:hpl-2_L3_downregulated
      WBPaper00042561:smg-2(RNAi)_upregulated
      WBPaper00044426:rotenone_5day_downregulated
      WBPaper00045017:blmp-1(tm548)_upregulated
      WBPaper00045257:bar-1(ga80)_upregulated
      WBPaper00045314:S.aureus-induced_hlh-30(tm1978)
      WBPaper00045314:S.aureus-induced_N2
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045774:clk-1_upregulated
      WBPaper00046161:Q40-aggregate-protein_Day7_Sarcosyl-soluble
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
      WBPaper00048971:daf-16(mgDf50)_downregulated_L1
      WBPaper00049018:ham-3(RNAi)_downregulated
      WBPaper00049377:MWCNT_downregulated
      WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050561:indole_10-fold_upregulated
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00051558:aging_regulated
      WBPaper00053140:DecreasingResponse_20nmAgCit
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053771:down_by_skn-1(RNAi)_at_dpy-7(e88)
      WBPaper00053771:up_at_3h-NaCl
      WBPaper00053771:up_at_24h-NaCl
      WBPaper00053771:up_at_dpy-7(e88)
      WBPaper00053888:drh-3(rrr2)_upregulated
      WBPaper00054796:cav-1(RNAi)_downregulated
      WBPaper00054872:egl-9(sa307)_upregulated
      WBPaper00055013:hmg-3(bar24)_upregulated
      WBPaper00055013:spt-16(RNAi)_upregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055386:eat-2(ad465)_downregulated
      WBPaper00055626:pry-1(mu38)_downregulated
      WBPaper00055827:daf-2(e1370)_upregulated
      WBPaper00055971:nhl-2(ok818)_20C_upregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056169:rrf-3(pk1426)_downregulated_L1
      WBPaper00056443:DietaryRestriction_downregulated
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00058598:mex-1(or286)_downregulated
      WBPaper00058955:heatshock_upregulated_CE
      WBPaper00059253:sucrose_stearic-acid_upregulated
      WBPaper00059895:wounding_upregulated
      WBPaper00059987:Wounding_upregulated
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060399:CoCl2_6hr_upregulated_N2
      WBPaper00060434:pH4.33_vs_pH6.33_uprgulated
      WBPaper00060459:bcat-1(RNAi)_upregulated
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060703:nas-38(ok3407)_upregulated
      WBPaper00061040:eat-2(ad1116)_downregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061340:ADEsh
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061390:N2_ascarosides_downregulated
      WBPaper00061424:Diet_MYb131_upregulated
      WBPaper00061527:fipr-23-fipr-24
      WBPaper00061613:human-amyloid-beta_upregulated
      WBPaper00061699:daf-18(ok480)_downregulated
      WBPaper00061853:osm-3(dh441)_downregulated
      WBPaper00061853:osm-3(dh441)_downregulated_tunicamycin
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062587:lsl-1(ljm1)_upregulated
      WBPaper00062587:lsl-1(tm4769)_upregulated
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064509:static-magnetic-field_downregulated
      WBPaper00064539:nhr-114(gk849)_upregulated
      WBPaper00064716:paraquat_downregulated
      WBPaper00064769:him-17(me24)_upregulated
      WBPaper00065199:Transgeneration-starvation_regulated_fed
      WBPaper00065315:mating_downregulated_Day2-7
      WBPaper00065315:mating_downregulated_Day6-7
      WBPaper00065392:Lb.plantarum_downregulated
      WBPaper00065392:Lb.reuteri_downregulated
      WBPaper00065392:Lb.rhamnosus_downregulated
      WBPaper00065392:P.pentosaceus_downregulated
      WBPaper00065746:eat-2(ad1113)_upregulated
      WBPaper00065746:tmc-1(rg1003)_downregulated
      WBPaper00065841:33_0
      WBPaper00065841:33_1
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
      WBPaper00066204:CdCl2_upregulated_mRNA
      WBPaper00066232:ash-2(RNAi)_downregulated_WT
      cgc4489_group_13
      WBPaper00030985:Erwinia_carotovora_downregulated
      WBPaper00031184:acrylamide_upregulated
      WBPaper00032948:StarveUp1
      WBPaper00034661:AgNPs_upregulated
      WBPaper00034757:up_by_oxidative_stress
      WBPaper00035424:ASER_up
      WBPaper00035873:osmotically_regulated
      WBPaper00036123:Cadmium_regulated
      WBPaper00036286:Pattern_F
      WBPaper00036383:ash-2_Day8_regulated
      WBPaper00037113:Chlorpyrifos_Diazinon_16C_regulated
      WBPaper00038172:tax-6null_up_regulated
      WBPaper00038462:aging_downregulated
      WBPaper00039851:Live_C_albicans_vs_HK_OP50
      WBPaper00039866:ClassComp_daf-19_downregulated
      WBPaper00040184:hcf-1up_sir-2.1up_daf-2up
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040858:eQTL_regulated_old
      WBPaper00040858:eQTL_regulated_reproductive
      WBPaper00041002:HF_11d_0.2mM_Down
      WBPaper00041002:HF_11d_2.0mM_Down
      WBPaper00041211:RPW-24_Up
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041960:N2_fasting_upregulated_9hto12h
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00042067:Cu2+_upregulated_WT
      WBPaper00042128:gei-8(ok1671)_upregulated
      WBPaper00042178:hlh-29(tm284)_upregulated
      WBPaper00042236:flcn-1(ok975)_upregulated
      WBPaper00044091:Bpseudomallei_repressed_12h
      WBPaper00046083:oga-1(ok1207)_OP50_upregulated
      WBPaper00046083:ogt-1(ok1474)_OP50_upregulated
      WBPaper00046083:pmk-1(km25)_OP50_downregulated
      WBPaper00047021:MWCNT_upregulated
      WBPaper00047070:DAF-16-dependent_UV_response
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00047070:N2_UV_upregulated
      WBPaper00047070:xpa-1_UV_upregulated
      WBPaper00048624:hlh-25(ok1710)_downregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00049311:AgNO3_regulated
      WBPaper00050520:lagr-1(gk327);hyl-1(ok976)_upregulated
      WBPaper00051448:P.aeruginosa_Liquid-Killing_upregulated
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00053550:daf-19(m86)_downregulated_3-fold-embryo
      WBPaper00053827:pyoverdine_upregulated
      WBPaper00055435:AuNPs_downregulated
      WBPaper00055435:MUA-AuNP-0.5_downregulated
      WBPaper00055435:MUA-AuNP-3_downregulated
      WBPaper00055899:nitroguanidine_regulated
      WBPaper00056330:mrps-5(RNAi)_downregulated
      WBPaper00057098:SiO2-nanoparticles_downregulated
      [cgc6390]:male_soma-enriched
    Interaction (17)
  Map_info: Map: I Position: 23.3614 Error: 0.056675
    Positive: Positive_clone: C37A5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene