WormBase Tree Display for Gene: WBGene00000560
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| WBGene00000560 | Evidence | Person_evidence | WBPerson168 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y46E12A | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | cnc-6 | Person_evidence | WBPerson168 | |||||
| Sequence_name | Y46E12A.1 | ||||||||
| Molecular_name | Y46E12A.1 | ||||||||
| Y46E12A.1.1 | |||||||||
| CE26996 | |||||||||
| Other_name | Y46E12A.d | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y46E12A.1 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | cnc-6 | ||||||||
| DB_info | Database | AceView | gene | 3C853 | |||||
| WormQTL | gene | WBGene00000560 | |||||||
| WormFlux | gene | WBGene00000560 | |||||||
| NDB | locus_tag | CELE_Y46E12A.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000560|UniProtKB=Q9N3V6 | |||||||
| family | PTHR36521 | ||||||||
| NCBI | gene | 175324 | |||||||
| RefSeq | protein | NM_065054.4 | |||||||
| TrEMBL | UniProtAcc | Q9N3V6 | |||||||
| UniProt_GCRP | UniProtAcc | Q9N3V6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cnc | ||||||||
| Allele (62) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00094059 | ||||||||
| 00106070 | |||||||||
| 00106071 | |||||||||
| Ortholog | WBGene00035459 | Caenorhabditis briggsae | From_analysis | OMA | |||||
| WBGene00061996 | Caenorhabditis remanei | From_analysis | OMA | ||||||
| WBGene00141653 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
| chrIII_pilon.g7007 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog | WBGene00007989 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00007990 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00014698 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00014699 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00045211 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00194727 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00007992 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00007682 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00014700 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Concise_description | cnc-6 encodes one of eleven C. elegans caenacin peptides; cnc-6 expression is strongly induced after infection by the fungus Drechmeria coniospora, suggesting that it functions as a secreted antimicrobial peptide in the innate immune response. | Paper_evidence | WBPaper00006488 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 04 Jan 2010 00:00:00 | ||||||||
| Automated_description | Involved in defense response to fungus and innate immune response. Expressed in intestine. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y46E12A.1 | |||||||
| Corresponding_transcript | Y46E12A.1.1 | ||||||||
| Other_sequence | NAC00286_2 | ||||||||
| MAC02348_1 | |||||||||
| BG467467.1 | |||||||||
| BU666480.1 | |||||||||
| BG467533.1 | |||||||||
| BU666521.1 | |||||||||
| CBC14285_1 | |||||||||
| Associated_feature | WBsf644961 | ||||||||
| WBsf224469 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00037124 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00020019 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056659 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr8218 | ||||||||
| Expr1018503 | |||||||||
| Expr1160129 | |||||||||
| Expr2010266 | |||||||||
| Expr2028508 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (176) | |||||||||
| Map_info | Map | III | Position | -18.0035 | Error | 0.460795 | |||
| Positive | Positive_clone | Y46E12A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006437 | ||||||||
| WBPaper00006488 | |||||||||
| WBPaper00032031 | |||||||||
| WBPaper00060703 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
