WormBase Tree Display for Gene: WBGene00007656

WBGene00007656 SMap: S_parent: Sequence: C17H1
  Identity: Version: 2
    Name: CGC_name: pals-2 Person_evidence: WBPerson260
      Sequence_name: C17H1.3
      Molecular_name: C17H1.3
        WP:CE15625
        CE15625
        C17H1.3.1
      Other_name: CELE_C17H1.3 Accession_evidence: NDB BX284601
      Public_name: pals-2
    DB_info: Database: AceView gene 1N691
        WormQTL gene WBGene00007656
        WormFlux gene WBGene00007656
        NDB locus_tag CELE_C17H1.3
        NCBI gene 182746
        RefSeq mRNA NM_060894.1
          protein NP_493295.1
            NM_060894.3
        TREEFAM TREEFAM_ID TF322878
        UniProt UniProtAcc O45254
        TrEMBL UniProtAcc O45254
        UniProt_GCRP UniProtAcc O45254
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:48 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 26 Oct 2016 09:42:35 WBPerson2970 Name_change: CGC_name: pals-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pals
    Allele: WBVar02122998
      WBVar02087120
      WBVar02087121
      WBVar02121357
      WBVar02123568
      WBVar02120442
      WBVar01556662
      WBVar01556663
      WBVar01556664
      WBVar01556665
      WBVar01499739
      WBVar01556666
      WBVar01556667
      WBVar01556668
      WBVar01556669
      WBVar01556670
      WBVar01556671
      WBVar00683278
      WBVar00683279
      WBVar00683280
      WBVar00683281
      WBVar00683282
      WBVar00683283
      WBVar00683284
      WBVar00683285
      WBVar02124149
      WBVar00683286
      WBVar00683287
      WBVar00683288
      WBVar00683289
      WBVar00683290
      WBVar00683291
      WBVar00683292
      WBVar00683293
      WBVar00683294
      WBVar00349608
      WBVar00349609
      WBVar00349610
      WBVar00349611
      WBVar00349612
      WBVar01894826
      WBVar01499230
      WBVar02080566
      WBVar02123447
      WBVar01501088
      WBVar01501089
      WBVar01501090
      WBVar01501091
      WBVar02151527
      WBVar01501092
      WBVar01501093
      WBVar01501094
      WBVar01501095
      WBVar01501096
      WBVar01501097
      WBVar01501098
      WBVar01501099
      WBVar01501100
      WBVar01501101
      WBVar01501102
      WBVar01501103
      WBVar01499999
      WBVar01501104
      WBVar01501105
      WBVar01501106
      WBVar01501107
      WBVar01501108
      WBVar01501109
      WBVar01501110
      WBVar01501111
      WBVar01501112
      WBVar01501113
      WBVar01501114
      WBVar01501115
      WBVar01501116
      WBVar00160254
      WBVar01501117
      WBVar01501118
      WBVar01501119
      WBVar01501120
      WBVar02120914
      WBVar01501121
      WBVar01501122
      WBVar01501123
      WBVar02121107
      WBVar02123874
      WBVar02120764
      WBVar02146298
      WBVar02120583
      WBVar02123173
    RNASeq_FPKM (74)
    Ortholog: Sp34_50055100 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g2650 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog: WBGene00009061 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00007662 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00007658 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00013294 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00016281 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00044237 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00044711 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Expressed in hypodermis and neurons. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C17H1.3
    Corresponding_transcript: C17H1.3.1
    Associated_feature: WBsf985775
  Experimental_info: RNAi_result: WBRNAi00029026 Inferred_automatically: RNAi_primary
      WBRNAi00040846 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr13461
      Expr1015993
      Expr1144893
      Expr2032937
    Drives_construct: WBCnstr00033576
    Construct_product: WBCnstr00033576
    Microarray_results (17)
    Expression_cluster: WBPaper00032425:up_in_lin-35
      WBPaper00032528:L3_depleted
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:dopaminergic-neurons_larva_enriched
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:intestine_embryo_enriched
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038168:lin-15B(n744)_upregulated
      WBPaper00038168:lin-35_upregulated
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
      WBPaper00042194:nhr-114(RNAi)_downregulated
      WBPaper00043945:MeHg_downregulated
      WBPaper00044316:HgCl2_20uM_upregulated
      WBPaper00044578:reduced-humidity_downregulated_microarray
      WBPaper00045050:csr-1(hypomorph)_upregulated
      WBPaper00045257:bar-1(ga80)_upregulated
      WBPaper00045401:N.parisii_8h_upregulated
      WBPaper00045401:N.parisii_16h_upregulated
      WBPaper00045401:N.parisii_30h_upregulated
      WBPaper00045774:clk-1_upregulated
      WBPaper00049484:elt-2(RNAi)_upregulated_L4
      WBPaper00050193:dpy-27(RNAi)_upregulated_L1
      WBPaper00050193:lsm-1(tm3585)_upregulated_L3
      WBPaper00050193:met-2(n4256)set-25(n5021)_upregulated_L1
      WBPaper00050370:mys-1(RNAi)_L3_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:daf-2(e1370)_vs_daf-2(e1370);mir-34(gk437)_regulated_dauer_25C
      WBPaper00050504:hrp-2(RNAi)_upregulated
      WBPaper00050743:elli-1(sam-3)_downregulated
      WBPaper00051137:N.parisii-virus_upregulated_N2
      WBPaper00051137:Orsay-virus_upregulated_N2
      WBPaper00051137:Orsay-virus_upregulated_rde-1(ne219)
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053020:OrsayVirus-infection_upregulated
      WBPaper00053020:OrsayVirus-infection_upregulated_microarray
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053321:lin-15B(RNAi)_downregulated_starved-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15);elt-7(tm840)_doenregulated
      WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00055013:spt-16(RNAi)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Metformin_upregulated
      WBPaper00055354:Psora-Allantoin_upregulated
      WBPaper00055354:Psora_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055941:atfs-1(et15)_upregulated
      WBPaper00055941:nuo-6(qm200)_upregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056034:pals-25(jy9)_upregulated
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056290:hsp-6(mg585)_upregulated
      WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
      WBPaper00056809:smn-1(ok355)_upregulated
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00057068:Cadmium_upregulated
      WBPaper00057068:ints-4(RNAi)_upregulated
      WBPaper00058598:mex-1(or286)_downregulated
      WBPaper00058598:spn-4(tm291)_downregulated
      WBPaper00058711:paraquat_downregulated
      WBPaper00058711:skn-1(lax188)_upregulated
      WBPaper00058711:wdr-5(ok1417)_downregulated
      WBPaper00058725:sftb-1(cer6)_upregulated
      WBPaper00058955:heatshock_upregulated_CE
      WBPaper00059253:stearic-acid_upregulated
      WBPaper00059253:sucrose_stearic-acid_upregulated
      WBPaper00059426:SiO2-nanoparticles_downregulated
      WBPaper00059754:E.faecalis_OG1RF_upregulated
      WBPaper00059987:Wounding_upregulated
      WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060871:M.humicola-extract_4h_regulated
      WBPaper00060886:spr-5(by101);met-2(n4256)_upregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061319:pnp-1(jy90)_upregulated
      WBPaper00061319:pnp-1(jy121)_upregulated
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061527:C17H1.6-C17H1.13
      WBPaper00061613:human-alpha-Synuclein(A53T)_upregulated
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00062056:lin-15B(n744)_upregulated
      WBPaper00062056:lin-15B(we23)_upregulated
      WBPaper00062056:lin-35(n745)_upregulated
      WBPaper00062056:lin-37(n758)_upregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062345:bortezomib_4h_upregulated_N2
      WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
      WBPaper00062345:bortezomib_30min_upregulated_N2
      WBPaper00062497:xpf-1(tm2842)_downregulated
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064107:lin-35(n745)_upregulated
      WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
      WBPaper00064532:pals-22(jy3)_upregulated
      WBPaper00064532:pals-25(icb98)_upregulated
      WBPaper00064532:pals-25(jy111)_upregulated
      WBPaper00064661:lpd-3(ok2138)_upregulated
      WBPaper00065029:cadmium_upregulated
      WBPaper00065086:JU1400_N.ausubeli_regulated
      WBPaper00065086:JU1400_N.ferruginous_regulated
      WBPaper00065086:JU1400_N.ironsii_regulated
      WBPaper00065086:JU1400_N.parisii_regulated
      WBPaper00065086:N2_N.ausubeli_regulated
      WBPaper00065086:N2_N.ferruginous_regulated
      WBPaper00065086:N2_N.ironsii_regulated
      WBPaper00065086:N2_N.parisii_regulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00065995:M.humicola-extract_downregulated_N2
      WBPaper00066204:CdCl2_upregulated_mRNA
      WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
      WBPaper00066232:hsf-1(RNAi)_upregulated_WT
      WBPaper00024393:strongly_regulated_dauer_genes
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00035227:heat_shock_regulated
      WBPaper00036286:Pattern_H
      WBPaper00041609:hpl-1_hpl-2_upregulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00042574:rde-1(ne219)_OrsayVirus_upregulated
      WBPaper00045015:nhr-25(RNAi)_upregulated
      WBPaper00045673:colistin_upregulated
      WBPaper00047070:xpa-1_UV_upregulated
      WBPaper00048637:lin-35(n745)_starvation_upregulated
      WBPaper00053550:daf-19(m86)_downregulated_L1
      [cgc5976]:class_2
    Interaction: WBInteraction000143559
      WBInteraction000152198
      WBInteraction000196284
      WBInteraction000227090
      WBInteraction000341673
      WBInteraction000356563
      WBInteraction000356755
      WBInteraction000423477
      WBInteraction000430412
      WBInteraction000458601
  Map_info: Map: I Position: 17.219
    Positive: Positive_clone: C17H1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene