WormBase Tree Display for Gene: WBGene00007633

WBGene00007633 SMap: S_parent: Sequence: CHROMOSOME_II
  Identity: Version: 1
    Name: Sequence_name: C16D2.1
      Molecular_name: C16D2.1a
        C16D2.1a.1
        CE15622
        C16D2.1b
        CE41203
        C16D2.1c
        CE41204
        C16D2.1b.1
        C16D2.1c.1
      Other_name: CELE_C16D2.1 Accession_evidence: NDB BX284602
      Public_name: C16D2.1
    DB_info: Database: AceView gene 2J423
        WormQTL gene WBGene00007633
        WormFlux gene WBGene00007633
        NDB locus_tag CELE_C16D2.1
        NCBI gene 174453
        RefSeq protein NM_001393144.1
            NM_063547.6
            NM_001129117.3
        TREEFAM TREEFAM_ID TF300142
        TrEMBL UniProtAcc O62061
            A5PEX1
            A5PEX0
        UniProt_GCRP UniProtAcc A5PEX0
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:48 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (50)
    RNASeq_FPKM (74)
    GO_annotation: 00004895
      00004896
      00004897
      00004898
      00115733
    Contained_in_operon: CEOP2709
    Ortholog (21)
    Paralog (14)
    Structured_description: Automated_description: Predicted to enable cullin family protein binding activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C16D2.1a
      C16D2.1b
      C16D2.1c
    Corresponding_transcript: C16D2.1a.1
      C16D2.1b.1
      C16D2.1c.1
    Other_sequence: CBC02189_1
      CSC00709_1
      FD517137.1
    Associated_feature: WBsf221851
  Experimental_info: RNAi_result (26)
    Expr_pattern: Expr1010681
      Expr1144770
      Expr2000874
      Expr2019092
    Drives_construct: WBCnstr00033591
    Construct_product: WBCnstr00033591
    Microarray_results: SMD_C16D2.1
      SMD_T24H10.2
      179049_at
      188946_at
      A_12_P105129
      A_12_P111123
      A_12_P141200
      A_12_P143485
      A_12_P143486
      A_12_P143487
      A_12_P143488
      A_12_P143489
      A_12_P159380
      A_12_P159381
      A_12_P159382
      A_12_P159383
      A_12_P159384
      Aff_C16D2.1
      Aff_T24H10.2
      GPL13394_WBGene00007633
      GPL13394_WBGene00012005
      GPL13914_C16D2.1
      GPL13914_T24H10.7
      GPL14144_C16D2.1a_329-388_0.923_7_B
      GPL14144_C16D2.1a_447-506_0.934_4_C
      GPL14144_C16D2.1a_496-555_0.971_1_A
      GPL14144_T24H10.7a_910-969_0.931_1_A
      GPL19516_CGZ0004937
      GPL19516_CGZ0004938
      GPL19516_CGZ0004939
      GPL19516_CGZ0036709
      GPL19516_CGZ0036710
      GPL19516_CGZ0036711
      GPL19516_CGZ0036712
      GPL19516_CGZ0036713
      GPL21109_C16D2.1a
      GPL21109_T24H10.7a
      GPL3518_CE15622
      GPL3518_CE16461
      GPL8304_CE_WBGene00007633_A
      GPL8304_CE_WBGene00007633_B
      GPL8304_CE_WBGene00007633_C
      GPL8304_CE_WBGene00012005_B
      GPL8673_C16D2_1P00069
      GPL8673_C16D2_1P00450
      GPL8673_C16D2_1P00523
      GPL9450_C16D2.1
      GPL9450_T24H10.2
      cea2.c.14445
      cea2.p.30512
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00033070:Rhine_upregulated
      WBPaper00037055:DAF-16_binding_DNA
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:coelomocytes_larva_enriched
      WBPaper00037950:coelomocytes_larva_SelectivelyEnriched
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
      WBPaper00041071:spe-44_downregulated
      WBPaper00042194:nhr-114(RNAi)_upregulated
      WBPaper00042215:wdr-23(tm1817)_upregulated
      WBPaper00044037:eat-2_regulated_nhr-62_dependent
      WBPaper00044037:eat-2_upregulated
      WBPaper00044316:CH3HgCl_7.5uM_upregulated
      WBPaper00044736:rising_dev_expression
      WBPaper00044760:germline_specific
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045417:128Q-huntingtin_downreglated
      WBPaper00045521:Spermatogenic
      WBPaper00045809:rsd-2(yp10)_downregulated
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
      WBPaper00046805:csr-1(RNAi)_upregulated_Set1
      WBPaper00046805:csr-1(RNAi)_upregulated_Set2
      WBPaper00046805:P-granule-RNAi_upregulated_Set1
      WBPaper00048690:hermaphrodite-Z1-Z4-daughter_enriched
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
      WBPaper00049920:Glucose-Diet_upregulated_N2
      WBPaper00050231:male_enriched
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:mir-34(OverExpression)_vs_N2_regulated_adult_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050522:mafr-1(tm6082)_downregulated
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00051265:F4_hrde-1(tm1200)_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053318:Aging_downregulated_mRNA_N2
      WBPaper00053318:mir-71(n4115)_downregulated_mRNA
      WBPaper00053599:female_vs_male_downregulated
      WBPaper00054872:egl-9(sa307)_downregulated
      WBPaper00055354:Rapamycin-Allantoin_upregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00055386:eat-2(ad465)_upregulated
      WBPaper00055482:pmt-2(RNAi)_upregulated
      WBPaper00055648:sperm_expressed
      WBPaper00055971:nhl-2(ok818)_20C_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056167:Cry5B_downregulated
      WBPaper00056290:hsp-6(mg585)_downregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:flcn-1(ok975)_downregulated
      WBPaper00057068:numr-1(RNAi)_upregulated
      WBPaper00057068:numr-1(RNAi)_upregulated_Cadmium
      WBPaper00058948:PA14_downregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059605:mut-16(pk710)_upregulated
      WBPaper00059987:Wounding_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
      WBPaper00060445:nfki-1(cer1)_ikb-1(nr2027)_upregulated_L4
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060683:hlh-11(ko1)_upregulated
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061340:AWC
      WBPaper00061340:Parent_of_PVP_and_rect_V
      WBPaper00061340:Pharyngeal_intestinal_valve
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
      WBPaper00061479:prg-1(tm872)_upregulated
      WBPaper00061479:ubc-9(ne4833)_upregulated
      WBPaper00061527:C34B2.3_17388-T01C3.5
      WBPaper00061530:nhr-49(e2144)_upregulated
      WBPaper00061902:camt-1(ok515)_regulated_AFD
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062456:doxycycline_upregulated_CB4856_transcript
      WBPaper00062520:qui-1(db104)_upregulated
      WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
      WBPaper00062590:Aging_upregulated_hypodermis
      WBPaper00062590:Aging_upregulated_intestine
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064130:Beta-Amyloid_24h_upregulated_mRNA
      WBPaper00064505:tamoxifen_downregulated
      WBPaper00064539:nhr-114(gk849)_downregulated
      WBPaper00064716:paraquat_downregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065096:npr-8(ok1439)_upregulated_Day1_25C
      WBPaper00065096:npr-8(ok1439)_upregulated_Day10_20C
      WBPaper00065096:npr-8(ok1439)_upregulated_Day10_25C
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00066038:mip-1(how5)_upregulated
      WBPaper00066085:hda-3(ok1991)_upregulated
      WBPaper00066093:E.coli-purE_upregulated
      WBPaper00066110:Cisplatin_upregulated_diploid
      WBPaper00066110:Doxorubicin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066232:ash-2(RNAi)_downregulated_WT
      WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
      WBPaper00066232:hsf-1(RNAi)_upregulated_WT
      cgc4489_group_11
      cgc4489_group_20
      cgc4489_male_enriched_transcription_factors
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026980:intestine_enriched
      WBPaper00031003:0hr_muscle_depleted
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00034757:up_by_oxidative_stress
      WBPaper00035084:L4_enriched_AIN-2_IP
      WBPaper00035227:heat_shock_regulated
      WBPaper00035588:alg-1(-)_upregulated
      WBPaper00035873:dpy-9_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00036123:Cadmium_regulated
      WBPaper00036130:mir-243_up_regulated
      WBPaper00036286:Pattern_E
      WBPaper00036286:Pattern_I
      WBPaper00037695:LD_3-day
      WBPaper00038172:aak-2overexpression_up_regulated
      WBPaper00038231:Cry5B_1.5-fold_upregulated
      WBPaper00040210:Chlorpyrifos_16C_regulated
      WBPaper00040210:Chlorpyrifos_24C_regulated
      WBPaper00040823:alg-1(gk214)_upregulated
      WBPaper00040985:AIN-2_asynchronous_muscle
      WBPaper00041002:HF_3d_2.0mM_Down
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_prime
      WBPaper00041370:spg-7(RNAi)_upregulated
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00042258:DA1877_upregulated_GravidAdult
      WBPaper00042274:tbx-2(bx59)_upregulated
      WBPaper00044091:Bpseudomallei_induced_8h
      WBPaper00044091:Bpseudomallei_induced_12h
      WBPaper00045263:0.1mM-paraquat_downregulated
      WBPaper00045263:isp-1(qm150)_downregulated
      WBPaper00045263:nuo-6(qm200)_downregulated
      WBPaper00045263:ProLongevity-mtROS_downregulated
      WBPaper00045673:colistin_downregulated
      WBPaper00045673:colistin_upregulated
      WBPaper00045960:L1-L4-lethargus_upregulated
      WBPaper00045960:L4-lethargus_upregulated
      WBPaper00046853:AOBr_M.aeruginosa-batch-culture_downregulated
      WBPaper00047070:xpa-1_UV_upregulated
      WBPaper00048637:lin-35(n745)_starvation_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00048989:N2_rapamycin_upregulated
      WBPaper00051387:Triclosan_downregulated
      WBPaper00055899:nitroguanidine_regulated
      WBPaper00056330:mrps-5(RNAi)_upregulated
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
      [cgc6390]:Cluster_B
      [cgc6390]:spermatogenesis-enriched
    Interaction (41)
  Map_info: Positive: Positive_clone: C16D2 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: II 1.04868
  Reference: WBPaper00038231
    WBPaper00038321
    WBPaper00059970
  Method: Gene