WormBase Tree Display for Gene: WBGene00006366
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WBGene00006366 | SMap | S_parent | Sequence | C44H4 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | sym-1 | Person_evidence | WBPerson252 | |||||
Sequence_name | C44H4.3 | ||||||||
Molecular_name | C44H4.3 | ||||||||
C44H4.3.1 | |||||||||
CE08724 | |||||||||
Other_name | CELE_C44H4.3 | Accession_evidence | NDB | BX284606 | |||||
Public_name | sym-1 | ||||||||
DB_info | Database | AceView | gene | XP201 | |||||
WormQTL | gene | WBGene00006366 | |||||||
WormFlux | gene | WBGene00006366 | |||||||
NDB | locus_tag | CELE_C44H4.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00006366|UniProtKB=G5EFP4 | |||||||
family | PTHR45617 | ||||||||
NCBI | gene | 181555 | |||||||
RefSeq | protein | NM_078025.7 | |||||||
TREEFAM | TREEFAM_ID | TF318447 | |||||||
TrEMBL | UniProtAcc | G5EFP4 | |||||||
UniProt_GCRP | UniProtAcc | G5EFP4 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | sym | ||||||||
Allele (59) | |||||||||
Legacy_information | [Herman RK] sym-1(mn601) by itself is essentially wild type but is synthetic lethal with any mec-8 loss-of-function mutation | ||||||||
Complementation_data | [Herman RK] complements sym-4(mn619) and sym-4(mn620) | ||||||||
Strain | WBStrain00034403 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00018491 | ||||||||
Ortholog (29) | |||||||||
Paralog | WBGene00002282 | Caenorhabditis elegans | From_analysis | Panther | |||||
WBGene00003915 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00022129 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00016974 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00011971 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00022789 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WBGene00008093 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WBGene00011345 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00008656 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00010621 | Caenorhabditis elegans | From_analysis | Panther | ||||||
Structured_description | Concise_description | sym-1 encodes a protein containing 15 contiguous leucine-rich repeats (LRRs) that functionally overlaps with sym-5 and interacts with mec-8 with respect to embryonic viability and attachment of body muscle to the extracellular cuticle; expression begins at the time of embryonic elongation and SYM-1 is secreted from the apical hypodermal surface of the embryo; microarray analyses indicate that sym-1 transcripts are reduced in lin-14 loss-of-function mutants, suggesting that LIN-14 positively regulates sym-1 expression. | Paper_evidence | WBPaper00003663 | |||||
WBPaper00026952 | |||||||||
Curator_confirmed | WBPerson48 | ||||||||
WBPerson1843 | |||||||||
Date_last_updated | 22 Jan 2009 00:00:00 | ||||||||
Automated_description | Located in extracellular space. Expressed in vulB1 and vulB2. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C44H4.3 | |||||||
Corresponding_transcript | C44H4.3.1 | ||||||||
Other_sequence (31) | |||||||||
Associated_feature | WBsf648737 | ||||||||
WBsf648738 | |||||||||
WBsf663571 | |||||||||
WBsf663572 | |||||||||
WBsf663573 | |||||||||
WBsf663574 | |||||||||
WBsf236690 | |||||||||
WBsf236691 | |||||||||
WBsf236692 | |||||||||
Experimental_info | RNAi_result (11) | ||||||||
Expr_pattern | Expr15946 | ||||||||
Expr1028203 | |||||||||
Expr1032565 | |||||||||
Expr1146483 | |||||||||
Expr2017179 | |||||||||
Expr2035315 | |||||||||
Drives_construct | WBCnstr00034388 | ||||||||
Construct_product | WBCnstr00034388 | ||||||||
Microarray_results (21) | |||||||||
Expression_cluster (336) | |||||||||
Interaction (92) | |||||||||
WBProcess | WBbiopr:00000039 | ||||||||
Map_info | Map | X | Position | 16.7569 | Error | 0.004929 | |||
Well_ordered | |||||||||
Positive | Inside_rearr | mnDp1 | |||||||
mnDf1 | |||||||||
mnDf19 | |||||||||
Positive_clone | C44H4 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
Negative | Outside_rearr | mnDf2 | |||||||
mnDf11 | |||||||||
Mapping_data | 2_point | 7086 | |||||||
7087 | |||||||||
7088 | |||||||||
7089 | |||||||||
Multi_point | 4518 | ||||||||
4719 | |||||||||
Pos_neg_data | 10228 | ||||||||
10229 | |||||||||
10230 | |||||||||
10231 | |||||||||
10232 | |||||||||
Reference (22) | |||||||||
Method | Gene |