WormBase Tree Display for Gene: WBGene00006366
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| WBGene00006366 | SMap | S_parent | Sequence | C44H4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | sym-1 | Person_evidence | WBPerson252 | |||||
| Sequence_name | C44H4.3 | ||||||||
| Molecular_name | C44H4.3 | ||||||||
| C44H4.3.1 | |||||||||
| CE08724 | |||||||||
| Other_name | CELE_C44H4.3 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | sym-1 | ||||||||
| DB_info | Database | AceView | gene | XP201 | |||||
| WormQTL | gene | WBGene00006366 | |||||||
| WormFlux | gene | WBGene00006366 | |||||||
| NDB | locus_tag | CELE_C44H4.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006366|UniProtKB=G5EFP4 | |||||||
| family | PTHR45617 | ||||||||
| NCBI | gene | 181555 | |||||||
| RefSeq | protein | NM_078025.7 | |||||||
| TREEFAM | TREEFAM_ID | TF318447 | |||||||
| TrEMBL | UniProtAcc | G5EFP4 | |||||||
| UniProt_GCRP | UniProtAcc | G5EFP4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sym | ||||||||
| Allele (59) | |||||||||
| Legacy_information | [Herman RK] sym-1(mn601) by itself is essentially wild type but is synthetic lethal with any mec-8 loss-of-function mutation | ||||||||
| Complementation_data | [Herman RK] complements sym-4(mn619) and sym-4(mn620) | ||||||||
| Strain | WBStrain00034403 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00018491 | ||||||||
| Ortholog (29) | |||||||||
| Paralog | WBGene00002282 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00003915 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00022129 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00016974 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00011971 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00022789 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00008093 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00011345 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00008656 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00010621 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Concise_description | sym-1 encodes a protein containing 15 contiguous leucine-rich repeats (LRRs) that functionally overlaps with sym-5 and interacts with mec-8 with respect to embryonic viability and attachment of body muscle to the extracellular cuticle; expression begins at the time of embryonic elongation and SYM-1 is secreted from the apical hypodermal surface of the embryo; microarray analyses indicate that sym-1 transcripts are reduced in lin-14 loss-of-function mutants, suggesting that LIN-14 positively regulates sym-1 expression. | Paper_evidence | WBPaper00003663 | |||||
| WBPaper00026952 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson1843 | |||||||||
| Date_last_updated | 22 Jan 2009 00:00:00 | ||||||||
| Automated_description | Located in extracellular space. Expressed in vulB1 and vulB2. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C44H4.3 | |||||||
| Corresponding_transcript | C44H4.3.1 | ||||||||
| Other_sequence (31) | |||||||||
| Associated_feature | WBsf648737 | ||||||||
| WBsf648738 | |||||||||
| WBsf663571 | |||||||||
| WBsf663572 | |||||||||
| WBsf663573 | |||||||||
| WBsf663574 | |||||||||
| WBsf236690 | |||||||||
| WBsf236691 | |||||||||
| WBsf236692 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr15946 | ||||||||
| Expr1028203 | |||||||||
| Expr1032565 | |||||||||
| Expr1146483 | |||||||||
| Expr2017179 | |||||||||
| Expr2035315 | |||||||||
| Drives_construct | WBCnstr00034388 | ||||||||
| Construct_product | WBCnstr00034388 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (336) | |||||||||
| Interaction (92) | |||||||||
| WBProcess | WBbiopr:00000039 | ||||||||
| Map_info | Map | X | Position | 16.7569 | Error | 0.004929 | |||
| Well_ordered | |||||||||
| Positive | Inside_rearr | mnDp1 | |||||||
| mnDf1 | |||||||||
| mnDf19 | |||||||||
| Positive_clone | C44H4 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Negative | Outside_rearr | mnDf2 | |||||||
| mnDf11 | |||||||||
| Mapping_data | 2_point | 7086 | |||||||
| 7087 | |||||||||
| 7088 | |||||||||
| 7089 | |||||||||
| Multi_point | 4518 | ||||||||
| 4719 | |||||||||
| Pos_neg_data | 10228 | ||||||||
| 10229 | |||||||||
| 10230 | |||||||||
| 10231 | |||||||||
| 10232 | |||||||||
| Reference (22) | |||||||||
| Method | Gene |
