WormBase Tree Display for Gene: WBGene00003915
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| WBGene00003915 | SMap | S_parent | Sequence | M88 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | pan-1 | Person_evidence | WBPerson57 | |||||
| Sequence_name | M88.6 | ||||||||
| Molecular_name | M88.6a | ||||||||
| M88.6a.1 | |||||||||
| CE47659 | |||||||||
| M88.6b | |||||||||
| CE23886 | |||||||||
| M88.6c | |||||||||
| CE48435 | |||||||||
| M88.6b.1 | |||||||||
| M88.6c.1 | |||||||||
| Other_name | CELE_M88.6 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | pan-1 | ||||||||
| DB_info | Database | AceView | gene | 3F655 | |||||
| WormQTL | gene | WBGene00003915 | |||||||
| WormFlux | gene | WBGene00003915 | |||||||
| NDB | locus_tag | CELE_M88.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003915|UniProtKB=Q9U3A0 | |||||||
| family | PTHR45617 | ||||||||
| NCBI | gene | 175596 | |||||||
| RefSeq | protein | NM_065523.8 | |||||||
| NM_065524.6 | |||||||||
| NM_001306693.3 | |||||||||
| SwissProt | UniProtAcc | Q9U3A0 | |||||||
| UniProt_GCRP | UniProtAcc | Q9U3A0 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pan | ||||||||
| Allele (32) | |||||||||
| Possibly_affected_by | WBVar02157206 | ||||||||
| Strain | WBStrain00035604 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (26) | |||||||||
| Paralog (13) | |||||||||
| Structured_description | Concise_description | pan-1 encodes a novel predicted transmembrane protein with extracellular leucine-rich repeats; loss of PAN-1 activity via RNAi results in molting defects and arrested L2-sized larvae, indicating that PAN-1 is required for completion of the larval molts; pan-1 expression is enriched in the germline and upregulated in animals mutant for unc-95, which encodes a LIM domain-containing protein that localizes to muscle dense bodies and is required for proper body wall muscle organization. | Paper_evidence | WBPaper00026763 | |||||
| WBPaper00030943 | |||||||||
| WBPaper00031097 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 04 Dec 2007 00:00:00 | ||||||||
| Automated_description | Enables DEAD/H-box RNA helicase binding activity. Involved in germ cell development and molting cycle. Located in P granule and plasma membrane. Expressed in several structures, including germ line; gonad; head muscle; somatic cell; and somatic nervous system. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | M88.6a | |||||||
| M88.6b | |||||||||
| M88.6c | |||||||||
| Corresponding_CDS_history | M88.6a:wp231 | ||||||||
| Corresponding_transcript | M88.6a.1 | ||||||||
| M88.6b.1 | |||||||||
| M88.6c.1 | |||||||||
| Other_sequence | CRC02892_1 | ||||||||
| CR03797 | |||||||||
| CR08861 | |||||||||
| CJC08025_1 | |||||||||
| CBC16569_1 | |||||||||
| CR08860 | |||||||||
| Associated_feature | WBsf658842 | ||||||||
| WBsf658843 | |||||||||
| WBsf992174 | |||||||||
| WBsf992175 | |||||||||
| WBsf1014776 | |||||||||
| WBsf224750 | |||||||||
| WBsf224751 | |||||||||
| Experimental_info | RNAi_result (36) | ||||||||
| Expr_pattern (12) | |||||||||
| Drives_construct | WBCnstr00014389 | ||||||||
| WBCnstr00017859 | |||||||||
| WBCnstr00035798 | |||||||||
| Construct_product | WBCnstr00014389 | ||||||||
| WBCnstr00017859 | |||||||||
| WBCnstr00035798 | |||||||||
| Regulate_expr_cluster | WBPaper00061377:PAN-1_interacting | ||||||||
| Antibody | WBAntibody00002316 | ||||||||
| Microarray_results (29) | |||||||||
| Expression_cluster (197) | |||||||||
| Interaction (326) | |||||||||
| Anatomy_function | WBbtf0483 | ||||||||
| WBbtf0484 | |||||||||
| WBbtf1096 | |||||||||
| WBbtf1097 | |||||||||
| WBbtf1099 | |||||||||
| WBbtf1100 | |||||||||
| Map_info | Map | III | Position | -3.10715 | Error | 0.00552 | |||
| Positive | Positive_clone | M88 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4192 | |||||||
| 4564 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (18) | |||||||||
| Remark | Sequence connection from [Bennett KL] [090402 ck1] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
