Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00006065

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00006065SMapS_parentSequenceF52D10
IdentityVersion1
NameCGC_namesto-3Person_evidenceWBPerson247
Sequence_nameF52D10.5
Molecular_nameF52D10.5
F52D10.5.1
CE03391
Other_nameCELE_F52D10.5Accession_evidenceNDBBX284606
Public_namesto-3
DB_infoDatabaseAceViewgeneXM238
WormQTLgeneWBGene00006065
WormFluxgeneWBGene00006065
NDBlocus_tagCELE_F52D10.5
PanthergeneCAEEL|WormBase=WBGene00006065|UniProtKB=Q20657
familyPTHR10264
NCBIgene191966
RefSeqproteinNM_077540.2
SwissProtUniProtAccQ20657
UniProt_GCRPUniProtAccQ20657
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:39WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsto
Allele (42)
Legacy_information[Barnes TM] sto for STOmatin family. Predicted gene F52D10.5
RNASeq_FPKM (74)
GO_annotation00068718
00068719
00068720
00113940
00113941
Ortholog (24)
ParalogWBGene00003166Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00006063Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00006064Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00006761Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00006741Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00006068Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00006066Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00006067Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00006061Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be located in plasma membrane. Expressed in RIB; ray neuron type B; and tail.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF52D10.5
Corresponding_transcriptF52D10.5.1
Other_sequenceBXC02315_1
Experimental_infoRNAi_resultWBRNAi00015398Inferred_automaticallyRNAi_primary
WBRNAi00032608Inferred_automaticallyRNAi_primary
WBRNAi00047965Inferred_automaticallyRNAi_primary
Expr_patternExpr12806
Expr14281
Expr1023509
Expr1151784
Expr2016971
Expr2035119
Drives_constructWBCnstr00018493
WBCnstr00019943
WBCnstr00019944
WBCnstr00022785
WBCnstr00034563
WBCnstr00040699
Construct_productWBCnstr00034563
Microarray_results (18)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_embryo_enriched
WBPaper00037950:pharyngeal-muscle_embryo_SelectivelyEnriched
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
WBPaper00041370:spg-7(RNAi)_upregulated_atfs-1_dependent
WBPaper00042194:nhr-114(RNAi)_downregulated
WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
WBPaper00044316:CH3HgCl_7.5uM_upregulated
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00048923:Aging_regulated
WBPaper00048988:daf-2(e1370)_daf-16(mu86)_downregulated_neuron
WBPaper00048988:daf-2(e1370)_downregulated_neuron
WBPaper00048988:neuron_expressed
WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00053402:cco-1(RNAi)_upregulated
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00056809:smn-1(ok355)_upregulated
WBPaper00057041:unc-70(cas983)_downregulated
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00061274:hypergravity_15xg_upregulated
WBPaper00061340:ADF
WBPaper00061340:AVB
WBPaper00061340:RIB
WBPaper00061340:Y
WBPaper00061527:fbxa-154_11499-Y44A6D.1
WBPaper00061530:nhr-49(e2144)_downregulated
WBPaper00061651:RIB_enriched
WBPaper00062103:neuron_enriched
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065315:mating_downregulated_Day2-7
WBPaper00065841:97_0
WBPaper00065841:110_1
WBPaper00065841:121_0
WBPaper00065841:128_0
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00031003:24hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00036123:Atrazine_regulated
WBPaper00041370:spg-7(RNAi)_upregulated
WBPaper00049336:aptf-1(gk794)_downregulated_3-fold-embryo
WBPaper00056330:mrps-5(RNAi)_upregulated
Interaction (52)
Map_infoMapXPosition5.10639Error0.049781
PositivePositive_cloneF52D10Person_evidenceWBPerson43
Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00030154
WBPaper00038491
WBPaper00055090
WBPaper00056324
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene