WormBase Tree Display for Gene: WBGene00006061
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| WBGene00006061 | SMap | S_parent | Sequence | F30A10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | stl-1 | Person_evidence | WBPerson247 | |||||
| Sequence_name | F30A10.5 | ||||||||
| Molecular_name | F30A10.5a | ||||||||
| F30A10.5a.1 | |||||||||
| CE47010 | |||||||||
| F30A10.5b | |||||||||
| F30A10.5b.1 | |||||||||
| Other_name | CELE_F30A10.5 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | stl-1 | ||||||||
| DB_info | Database | AceView | gene | 1K62 | |||||
| WormQTL | gene | WBGene00006061 | |||||||
| WormFlux | gene | WBGene00006061 | |||||||
| NDB | locus_tag | CELE_F30A10.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006061|UniProtKB=H2FLJ1 | |||||||
| family | PTHR43327 | ||||||||
| NCBI | gene | 172777 | |||||||
| RefSeq | protein | NM_001264177.4 | |||||||
| NM_001264176.4 | |||||||||
| SwissProt | UniProtAcc | H2FLJ1 | |||||||
| UniProt_GCRP | UniProtAcc | H2FLJ1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:39 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | stl | ||||||||
| Allele (17) | |||||||||
| Legacy_information | [Barnes TM] stl for STomatin-Like. Very close ortholog of a human stomatin-like protein. Predicted gene F30A10.5 | ||||||||
| Strain | WBStrain00003182 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00021329 | ||||||||
| 00021330 | |||||||||
| 00021331 | |||||||||
| 00021332 | |||||||||
| 00021333 | |||||||||
| 00021334 | |||||||||
| 00113934 | |||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00003166 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00006063 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006064 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006065 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006066 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006067 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006068 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006741 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006761 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to be involved in mitochondrion organization. Located in mitochondrion. Expressed in head neurons and pharynx. Is an ortholog of human STOML2 (stomatin like 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F30A10.5a | |||||||
| F30A10.5b | |||||||||
| Corresponding_CDS_history | F30A10.5:wp90 | ||||||||
| F30A10.5:wp229 | |||||||||
| Corresponding_transcript | F30A10.5a.1 | ||||||||
| F30A10.5b.1 | |||||||||
| Other_sequence (75) | |||||||||
| Associated_feature | WBsf649477 | ||||||||
| WBsf664758 | |||||||||
| WBsf981078 | |||||||||
| Experimental_info | RNAi_result (15) | ||||||||
| Expr_pattern | Chronogram1982 | ||||||||
| Expr11475 | |||||||||
| Expr1016775 | |||||||||
| Expr1032536 | |||||||||
| Expr1149856 | |||||||||
| Expr2016966 | |||||||||
| Expr2035114 | |||||||||
| Drives_construct | WBCnstr00003658 | ||||||||
| WBCnstr00034565 | |||||||||
| Construct_product | WBCnstr00018700 | ||||||||
| WBCnstr00018701 | |||||||||
| WBCnstr00034565 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (140) | |||||||||
| Interaction (65) | |||||||||
| Map_info | Map | I | Position | 3.77056 | Error | 0.000852 | |||
| Positive | Positive_clone | F30A10 | Author_evidence | (genomic sequence, | |||||
| Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
| Mapping_data | Multi_point | 4890 | |||||||
| 4707 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006465 | ||||||||
| WBPaper00030154 | |||||||||
| WBPaper00037777 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00043115 | |||||||||
| WBPaper00043145 | |||||||||
| WBPaper00043532 | |||||||||
| WBPaper00044657 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
