WormBase Tree Display for Gene: WBGene00006061

WBGene00006061 SMap: S_parent: Sequence: F30A10
  Identity: Version: 1
    Name: CGC_name: stl-1 Person_evidence: WBPerson247
      Sequence_name: F30A10.5
      Molecular_name: F30A10.5a
        F30A10.5a.1
        CE47010
        F30A10.5b
        F30A10.5b.1
      Other_name: CELE_F30A10.5 Accession_evidence: NDB BX284601
      Public_name: stl-1
    DB_info: Database: AceView gene 1K62
        WormQTL gene WBGene00006061
        WormFlux gene WBGene00006061
        NDB locus_tag CELE_F30A10.5
        Panther gene CAEEL|WormBase=WBGene00006061|UniProtKB=H2FLJ1
          family PTHR43327
        NCBI gene 172777
        RefSeq protein NM_001264177.4
            NM_001264176.4
        SwissProt UniProtAcc H2FLJ1
        UniProt_GCRP UniProtAcc H2FLJ1
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:39 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: stl
    Allele (17)
    Legacy_information: [Barnes TM] stl for STomatin-Like. Very close ortholog of a human stomatin-like protein. Predicted gene F30A10.5
    Strain: WBStrain00003182
    RNASeq_FPKM (74)
    GO_annotation: 00021329
      00021330
      00021331
      00021332
      00021333
      00021334
      00113934
    Ortholog (38)
    Paralog: WBGene00003166 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00006063 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00006064 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00006065 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00006066 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00006067 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00006068 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00006741 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00006761 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to be involved in mitochondrion organization. Located in mitochondrion. Expressed in head neurons and pharynx. Is an ortholog of human STOML2 (stomatin like 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F30A10.5a
      F30A10.5b
    Corresponding_CDS_history: F30A10.5:wp90
      F30A10.5:wp229
    Corresponding_transcript: F30A10.5a.1
      F30A10.5b.1
    Other_sequence (75)
    Associated_feature: WBsf649477
      WBsf664758
      WBsf981078
  Experimental_info: RNAi_result (15)
    Expr_pattern: Chronogram1982
      Expr11475
      Expr1016775
      Expr1032536
      Expr1149856
      Expr2016966
      Expr2035114
    Drives_construct: WBCnstr00003658
      WBCnstr00034565
    Construct_product: WBCnstr00018700
      WBCnstr00018701
      WBCnstr00034565
    Microarray_results (21)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032528:L3_enriched
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037047:insoluble_protein
      WBPaper00037777:lipid_raft_proteins
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038289:oocyte_protein
      WBPaper00044128:DietaryRestriction_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00044786:lem-2(tm1582)_upregulated
      WBPaper00045521:Gender_Neutral
      WBPaper00045774:clk-1_upregulated
      WBPaper00046509:htz-1(ok3099)_downregulated
      WBPaper00046509:lin-35(n745)_downregulated
      WBPaper00048988:daf-16(mu86)_upregulated_neuron
      WBPaper00048988:neuron_expressed
      WBPaper00049545:cco-1(RNAi)_upregulated
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050412:cco-1(RNAi)_upregulated_N2
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:epidermis_specific
      WBPaper00051555:atm-1(gk186)_regulated_protein
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053402:cco-1(RNAi)_upregulated
      WBPaper00053810:clk-1(qm30)_upregulated
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00053810:isp-1(qm150)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00055137:S.maltophilia_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055482:pmt-2(RNAi)_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056290:hsp-6(mg585)_upregulated
      WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056501:P.aeruginosa_downregulated_mitochondria-protein
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00058691:cfp-1(tm6369)_upregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059609:malt-1_ilc-17.1_nfki-1_downregulated
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060084:cco-1(RNAi)_upregulated_lin-40(yth27)
      WBPaper00060084:cco-1(RNAi)_upregulated_N2
      WBPaper00060278:atp-2(RNAi)_upregulated
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00060909:atfs-1(et18)_upregulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061203:spr-1(ok2144)_downregulated
      WBPaper00061340:URX
      WBPaper00061340:XXX
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061527:T02E1.2-uri-1
      WBPaper00061651:XXX_enriched
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062193:hsf-1(RNAi)_downregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062197:mec-8_downregulated
      WBPaper00062237:dnj-21(RNAi)_upregulated_protein
      WBPaper00062293:isp-1(qm150)_upregulated
      WBPaper00062498:PPM-1.D_interacting
      WBPaper00062554:MAGU-2_interacting
      WBPaper00062590:Aging_upregulated_coelomocyte
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064637:cox-5B(RNAi)_upregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00064992:Eugenol_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065373:sek-1(km4)_upregulated_cisplatin
      WBPaper00065841:28_0
      WBPaper00065841:40_0
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_1
      WBPaper00006465:II_ethanol_late_induction
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00030985:Enterococcus_faecalis_downregulated
      WBPaper00032948:FedUp
      WBPaper00036286:Pattern_H
      WBPaper00038427:lin-54_embryo_changed
      WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2down
      WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
      WBPaper00040210:Diazinon_24C_regulated
      WBPaper00040985:AIN-2_asynchronous_muscle
      WBPaper00041370:spg-7(RNAi)_upregulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_EtBr-exposed_51h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:control_vs_UVC-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00045263:isp-1(qm150)_upregulated
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00045960:L1-L4-lethargus_downregulated
      WBPaper00045960:L4-lethargus_downregulated
      WBPaper00048989:N2_rapamycin_downregulated
      WBPaper00049538:atfs-1(et18)_upregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MD_pd(66_min)
      [cgc5767]:expression_class_SM
      [cgc5767]:expression_class_SMD
      [cgc6390]:oogenesis-enriched
    Interaction (65)
  Map_info: Map: I Position: 3.77056 Error: 0.000852
    Positive: Positive_clone: F30A10 Author_evidence: (genomic sequence,
          Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4890
        4707
    Pseudo_map_position
  Reference: WBPaper00006465
    WBPaper00030154
    WBPaper00037777
    WBPaper00038491
    WBPaper00043115
    WBPaper00043145
    WBPaper00043532
    WBPaper00044657
    WBPaper00055090
    WBPaper00064339
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene