WormBase Tree Display for Gene: WBGene00006050

WBGene00006050 SMap: S_parent: Sequence: K07F5
  Identity: Version: 1
    Name: CGC_name: ssq-1 Person_evidence: WBPerson680
      Sequence_name: K07F5.11
      Molecular_name: K07F5.11
        K07F5.11.1
        CE06125
      Other_name: CELE_K07F5.11 Accession_evidence: NDB BX284604
      Public_name: ssq-1
    DB_info: Database: AceView gene 4K617
        WormQTL gene WBGene00006050
        WormFlux gene WBGene00006050
        NDB locus_tag CELE_K07F5.11
        Panther gene CAEEL|WormBase=WBGene00006050|UniProtKB=Q21294
          family PTHR31192
        NCBI gene 177835
        RefSeq protein NM_069367.5
        TrEMBL UniProtAcc Q21294
        UniProt_GCRP UniProtAcc Q21294
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:39 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ssq
    Allele (31)
    RNASeq_FPKM (74)
    Ortholog (35)
    Paralog: WBGene00006052 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00006053 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00006051 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Concise_description: ssq-1 encodes a member of the sperm-specific, class Q family of proteins; about 5% of ssq-1 transcripts are RNA edited to change A to G resulting in a change to residue 127 from an Gto a G. Paper_evidence: WBPaper00045975
          Curator_confirmed: WBPerson1843
            WBPerson4025
          Date_last_updated: 28 Dec 2014 00:00:00
      Automated_description: Enriched in several structures, including amphid sheath cell; distal tip cell; germ line; neurons; and sperm based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and age-1 based on microarray and RNA-seq studies. Is affected by twenty-six chemicals including Ethanol; methylmercury hydroxide; and nicotinic acid based on RNA-seq; microarray; and proteomic studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: K07F5.11
    Corresponding_transcript: K07F5.11.1
    Other_sequence: EX558845.1
      Acan_isotig12509
      EX543780.1
      ACC06891_1
      BXC07703_1
      CR07619
      JI473707.1
      ACC06456_1
    Associated_feature: WBsf228887
  Experimental_info: RNAi_result: WBRNAi00022578 Inferred_automatically: RNAi_primary
      WBRNAi00050182 Inferred_automatically: RNAi_primary
      WBRNAi00113754 Inferred_automatically: RNAi_primary
      WBRNAi00016745 Inferred_automatically: RNAi_primary
      WBRNAi00007440 Inferred_automatically: RNAi_primary
      WBRNAi00113750 Inferred_automatically: RNAi_primary
      WBRNAi00034081 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1018562
      Expr1032533
      Expr1153876
      Expr2016940
      Expr2035088
    Drives_construct: WBCnstr00034574
    Construct_product: WBCnstr00034574
    Microarray_results (17)
    Expression_cluster (254)
    Interaction (114)
  Map_info: Map: IV Position: 4.43434 Error: 0.000397
    Positive: Positive_clone: K07F5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00025088
    WBPaper00038491
    WBPaper00064850
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene