WormBase Tree Display for Gene: WBGene00006052

WBGene00006052 SMap: S_parent: Sequence: ZC477
  Identity: Version: 1
    Name: CGC_name: ssq-3 Person_evidence: WBPerson680
      Sequence_name: ZC477.1
      Molecular_name: ZC477.1
        ZC477.1.1
        CE47991
      Other_name: CELE_ZC477.1 Accession_evidence: NDB BX284604
      Public_name: ssq-3
    DB_info: Database: AceView gene 4H875
        WormQTL gene WBGene00006052
        WormFlux gene WBGene00006052
        NDB locus_tag CELE_ZC477.1
        Panther gene CAEEL|WormBase=WBGene00006052|UniProtKB=Q23347
          family PTHR31192
        NCBI gene 191964
        RefSeq protein NM_068712.5
        TrEMBL UniProtAcc Q23347
        UniProt_GCRP UniProtAcc Q23347
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:39 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ssq
    Allele (35)
    RNASeq_FPKM (74)
    Ortholog (28)
    Paralog: WBGene00006050 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00006051 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00006053 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
    Structured_description: Automated_description: Enriched in ABarppaapp; ABarpppapp; intestine; and sperm based on single-cell RNA-seq and microarray studies. Is affected by several genes including daf-2; age-1; and dpy-10 based on microarray; RNA-seq; and tiling array studies. Is affected by thirty chemicals including Ethanol; methylmercuric chloride; and manganese chloride based on RNA-seq; microarray; and proteomic studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: ZC477.1
    Corresponding_CDS_history: ZC477.1:wp234
    Corresponding_transcript: ZC477.1.1
    Other_sequence (45)
    Associated_feature: WBsf996888
      WBsf996889
      WBsf1017656
      WBsf228501
  Experimental_info: RNAi_result: WBRNAi00021725 Inferred_automatically: RNAi_primary
      WBRNAi00058954 Inferred_automatically: RNAi_primary
      WBRNAi00021719 Inferred_automatically: RNAi_primary
      WBRNAi00019418 Inferred_automatically: RNAi_primary
      WBRNAi00054449 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1162390
      Expr2016942
      Expr2035090
    Drives_construct: WBCnstr00034572
    Construct_product: WBCnstr00034572
    Microarray_results (14)
    Expression_cluster (227)
    Interaction (108)
  Map_info: Map: IV Position: 3.28957 Error: 4.7e-05
    Positive: Positive_clone: ZC477 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00025088
    WBPaper00038491
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene