WormBase Tree Display for Gene: WBGene00005000
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| WBGene00005000 | Evidence | Author_evidence | Patthy L | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Hodgkin JA | |||||||||
| SMap | S_parent | Sequence | C48E7 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | spp-15 | |||||||
| Sequence_name | C48E7.10 | ||||||||
| Molecular_name | C48E7.10 | ||||||||
| C48E7.10.1 | |||||||||
| CE26915 | |||||||||
| Other_name | CELE_C48E7.10 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | spp-15 | ||||||||
| DB_info | Database | AceView | gene | 1G826 | |||||
| WormQTL | gene | WBGene00005000 | |||||||
| WormFlux | gene | WBGene00005000 | |||||||
| NDB | locus_tag | CELE_C48E7.10 | |||||||
| NCBI | gene | 172318 | |||||||
| RefSeq | protein | NM_059402.7 | |||||||
| TREEFAM | TREEFAM_ID | TF342835 | |||||||
| TrEMBL | UniProtAcc | Q9BIC4 | |||||||
| UniProt_GCRP | UniProtAcc | Q9BIC4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | spp | ||||||||
| Allele (13) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (26) | |||||||||
| Paralog | WBGene00004992 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00004993 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00004995 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00004998 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Automated_description | Enriched in several structures, including body wall muscle cell; coelomocyte; distal tip cell; enteric muscle; and head mesodermal cell based on tiling array; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by fifteen chemicals including rotenone; Zidovudine; and Psoralens based on RNA-seq; microarray; and proteomic studies. Is predicted to encode a protein with the following domains: Saposin B type, region 2; Saposin B type domain; Saposin-like type B, region 2; and Saposin-like. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C48E7.10 | |||||||
| Corresponding_transcript | C48E7.10.1 | ||||||||
| Other_sequence (17) | |||||||||
| Associated_feature | WBsf649225 | ||||||||
| WBsf655276 | |||||||||
| WBsf663767 | |||||||||
| WBsf219565 | |||||||||
| WBsf219566 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00042738 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00042737 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00042744 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1026826 | ||||||||
| Expr1032487 | |||||||||
| Expr1146730 | |||||||||
| Expr2016070 | |||||||||
| Expr2034306 | |||||||||
| Drives_construct | WBCnstr00035278 | ||||||||
| Construct_product | WBCnstr00035278 | ||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (182) | |||||||||
| Map_info | Map | I | Position | 0.885131 | |||||
| Positive | Positive_clone | C48E7 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024209 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
