WormBase Tree Display for Gene: WBGene00004992
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| WBGene00004992 | Evidence | Author_evidence | Patthy L | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Hodgkin JA | |||||||||
| SMap | S_parent | Sequence | ZK616 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | spp-7 | |||||||
| Sequence_name | ZK616.9 | ||||||||
| Molecular_name | ZK616.9a | ||||||||
| ZK616.9a.1 | |||||||||
| CE26344 | |||||||||
| ZK616.9b | |||||||||
| CE49425 | |||||||||
| ZK616.9b.1 | |||||||||
| Other_name | ZK616.b | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_ZK616.9 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | spp-7 | ||||||||
| DB_info | Database | AceView | gene | 4G178 | |||||
| WormQTL | gene | WBGene00004992 | |||||||
| WormFlux | gene | WBGene00004992 | |||||||
| NDB | locus_tag | CELE_ZK616.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004992|UniProtKB=V6CM12 | |||||||
| family | PTHR11480 | ||||||||
| NCBI | gene | 177326 | |||||||
| RefSeq | protein | NM_068407.5 | |||||||
| NM_001306908.4 | |||||||||
| TrEMBL | UniProtAcc | Q9N4M7 | |||||||
| V6CM12 | |||||||||
| UniProt_GCRP | UniProtAcc | V6CM12 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | spp | ||||||||
| Allele (27) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (29) | |||||||||
| Paralog | WBGene00004993 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00004995 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004998 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00005000 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Concise_description | spp-7 encodes an antimicrobial peptide that belongs to the SPP-protein family, called caenopores, with structural similarity to saposin-like proteins (SAPLIPs), the amoebapores and the mammalian NK-lysin and granulysin; caenopores are part of the worm's innate immune system and interact with and eliminate bacteria via membrane pore-forming activity; C. elegans has at least 33 putative SPP proteins; promoter-gfp studies indicate that spp-7 is expressed in pharyngeal muscle, head neurons and the intestine. | Paper_evidence | WBPaper00029438 | |||||
| WBPaper00035289 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 17 Sep 2013 00:00:00 | ||||||||
| Automated_description | Expressed in head neurons; intestine; and pm7. Is predicted to encode a protein with the following domains: Saposin B type domain; Saposin-like type B, region 2; and Saposin-like. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK616.9a | |||||||
| ZK616.9b | |||||||||
| Corresponding_transcript | ZK616.9a.1 | ||||||||
| ZK616.9b.1 | |||||||||
| Other_sequence (13) | |||||||||
| Associated_feature | WBsf651801 | ||||||||
| WBsf996501 | |||||||||
| WBsf1017381 | |||||||||
| WBsf230088 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00000717 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00038362 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00059557 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4719 | ||||||||
| Expr1026928 | |||||||||
| Expr1162973 | |||||||||
| Expr2016085 | |||||||||
| Expr2034321 | |||||||||
| Drives_construct | WBCnstr00012196 | ||||||||
| WBCnstr00015889 | |||||||||
| WBCnstr00035285 | |||||||||
| Construct_product | WBCnstr00012196 | ||||||||
| WBCnstr00035285 | |||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (136) | |||||||||
| Interaction | WBInteraction000503638 | ||||||||
| Map_info | Map | IV | Position | 1.65867 | Error | 0.001692 | |||
| Positive | Positive_clone | ZK616 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024209 | ||||||||
| WBPaper00029438 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
