WormBase Tree Display for Gene: WBGene00004992
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WBGene00004992 | Evidence | Author_evidence | Patthy L | ||||
---|---|---|---|---|---|---|---|
Hodgkin JA | |||||||
SMap | S_parent | Sequence | ZK616 | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | spp | ||||||
Allele (27) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog (29) | |||||||
Paralog | WBGene00004993 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
WBGene00004995 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00004998 | Caenorhabditis elegans | From_analysis | Panther | ||||
WBGene00005000 | Caenorhabditis elegans | From_analysis | Panther | ||||
Structured_description | Concise_description | spp-7 encodes an antimicrobial peptide that belongs to the SPP-protein family, called caenopores, with structural similarity to saposin-like proteins (SAPLIPs), the amoebapores and the mammalian NK-lysin and granulysin; caenopores are part of the worm's innate immune system and interact with and eliminate bacteria via membrane pore-forming activity; C. elegans has at least 33 putative SPP proteins; promoter-gfp studies indicate that spp-7 is expressed in pharyngeal muscle, head neurons and the intestine. | Paper_evidence | WBPaper00029438 | |||
WBPaper00035289 | |||||||
Curator_confirmed | WBPerson324 | ||||||
Date_last_updated | 17 Sep 2013 00:00:00 | ||||||
Automated_description | Expressed in head neurons; intestine; and pm7. Is predicted to encode a protein with the following domains: Saposin B type domain; Saposin-like type B, region 2; and Saposin-like. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | ZK616.9a | |||||
ZK616.9b | |||||||
Corresponding_transcript | ZK616.9a.1 | ||||||
ZK616.9b.1 | |||||||
Other_sequence (13) | |||||||
Associated_feature | WBsf651801 | ||||||
WBsf996501 | |||||||
WBsf1017381 | |||||||
WBsf230088 | |||||||
Experimental_info | RNAi_result | WBRNAi00000717 | Inferred_automatically | RNAi_primary | |||
WBRNAi00038362 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00059557 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr4719 | ||||||
Expr1026928 | |||||||
Expr1162973 | |||||||
Expr2016085 | |||||||
Expr2034321 | |||||||
Drives_construct | WBCnstr00012196 | ||||||
WBCnstr00015889 | |||||||
WBCnstr00035285 | |||||||
Construct_product | WBCnstr00012196 | ||||||
WBCnstr00035285 | |||||||
Microarray_results (16) | |||||||
Expression_cluster (136) | |||||||
Interaction | WBInteraction000503638 | ||||||
Map_info | Map | IV | Position | 1.65867 | Error | 0.001692 | |
Positive | Positive_clone | ZK616 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00024209 | ||||||
WBPaper00029438 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |