WormBase Tree Display for Gene: WBGene00004998

WBGene00004998 Evidence: Author_evidence: Patthy L
      Hodgkin JA
  SMap: S_parent: Sequence: F08F1
  Identity: Version: 1
    Name: CGC_name: spp-13
      Sequence_name: F08F1.6
      Molecular_name: F08F1.6
        F08F1.6.1
        CE09253
      Other_name: CELE_F08F1.6 Accession_evidence: NDB BX284606
      Public_name: spp-13
    DB_info: Database: AceView gene XJ36
        WormQTL gene WBGene00004998
        WormFlux gene WBGene00004998
        NDB locus_tag CELE_F08F1.6
        Panther gene CAEEL|WormBase=WBGene00004998|UniProtKB=O17387
          family PTHR11480
        NCBI gene 184191
        RefSeq protein NM_001383615.2
        TREEFAM TREEFAM_ID TF320400
        TrEMBL UniProtAcc O17387
        UniProt_GCRP UniProtAcc O17387
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:37 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: spp
    Allele (28)
    RNASeq_FPKM (74)
    Ortholog (22)
    Paralog: WBGene00004992 Caenorhabditis elegans From_analysis: Panther
      WBGene00004993 Caenorhabditis elegans From_analysis: Panther
      WBGene00004995 Caenorhabditis elegans From_analysis: Panther
      WBGene00005000 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Enriched in several structures, including head mesodermal cell; hypodermis; interfacial epithelial cell; intestine; and sensory neurons based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; RNA-seq; and proteomic studies. Is affected by twenty-one chemicals including Ethanol; methylmercury hydroxide; and D-glucose based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Saposin B type, region 2; Saposin B type domain; Saposin-like type B, region 2; and Saposin-like. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F08F1.6
    Corresponding_transcript: F08F1.6.1
    Other_sequence: CJC00034_1
    Associated_feature: WBsf654213
      WBsf670838
      WBsf670839
      WBsf1006144
      WBsf237680
      WBsf237681
  Experimental_info: RNAi_result: WBRNAi00044011 Inferred_automatically: RNAi_primary
      WBRNAi00030651 Inferred_automatically: RNAi_primary
      WBRNAi00012900 Inferred_automatically: RNAi_primary
      WBRNAi00075921 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1023456
      Expr1032486
      Expr1147978
      Expr2016068
      Expr2034304
    Drives_construct: WBCnstr00035280
    Construct_product: WBCnstr00035280
    Microarray_results (18)
    Expression_cluster (255)
    Interaction (35)
  Map_info: Map: X Position: -0.103919
    Positive: Positive_clone: F08F1 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00024209
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene