WormBase Tree Display for Gene: WBGene00004992
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WBGene00004992 | Evidence | Author_evidence (2) | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | ZK616 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | spp-7 | |||||||
Sequence_name | ZK616.9 | ||||||||
Molecular_name | ZK616.9a | ||||||||
ZK616.9a.1 | |||||||||
CE26344 | |||||||||
ZK616.9b | |||||||||
CE49425 | |||||||||
ZK616.9b.1 | |||||||||
Other_name | ZK616.b | Curator_confirmed | WBPerson1983 | ||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
CELE_ZK616.9 | Accession_evidence | NDB | BX284604 | ||||||
Public_name | spp-7 | ||||||||
DB_info | Database | AceView | gene | 4G178 | |||||
WormQTL | gene | WBGene00004992 | |||||||
WormFlux | gene | WBGene00004992 | |||||||
NDB | locus_tag | CELE_ZK616.9 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004992|UniProtKB=V6CM12 | |||||||
family | PTHR11480 | ||||||||
NCBI | gene | 177326 | |||||||
RefSeq | protein | NM_068407.5 | |||||||
NM_001306908.4 | |||||||||
TrEMBL | UniProtAcc | Q9N4M7 | |||||||
V6CM12 | |||||||||
UniProt_GCRP | UniProtAcc | V6CM12 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | spp | ||||||||
Allele (27) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (29) | |||||||||
Paralog | WBGene00004993 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00004995 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00004998 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00005000 | Caenorhabditis elegans | From_analysis | Panther | ||||||
Structured_description | Concise_description | spp-7 encodes an antimicrobial peptide that belongs to the SPP-protein family, called caenopores, with structural similarity to saposin-like proteins (SAPLIPs), the amoebapores and the mammalian NK-lysin and granulysin; caenopores are part of the worm's innate immune system and interact with and eliminate bacteria via membrane pore-forming activity; C. elegans has at least 33 putative SPP proteins; promoter-gfp studies indicate that spp-7 is expressed in pharyngeal muscle, head neurons and the intestine. | Paper_evidence | WBPaper00029438 | |||||
WBPaper00035289 | |||||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 17 Sep 2013 00:00:00 | ||||||||
Automated_description | Expressed in head neurons; intestine; and pm7. Is predicted to encode a protein with the following domains: Saposin B type domain; Saposin-like type B, region 2; and Saposin-like. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | ZK616.9a | |||||||
ZK616.9b | |||||||||
Corresponding_transcript | ZK616.9a.1 | ||||||||
ZK616.9b.1 | |||||||||
Other_sequence (13) | |||||||||
Associated_feature | WBsf651801 | ||||||||
WBsf996501 | |||||||||
WBsf1017381 | |||||||||
WBsf230088 | |||||||||
Experimental_info | RNAi_result | WBRNAi00000717 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00038362 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00059557 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr4719 | ||||||||
Expr1026928 | |||||||||
Expr1162973 | |||||||||
Expr2016085 | |||||||||
Expr2034321 | |||||||||
Drives_construct | WBCnstr00012196 | ||||||||
WBCnstr00015889 | |||||||||
WBCnstr00035285 | |||||||||
Construct_product | WBCnstr00012196 | ||||||||
WBCnstr00035285 | |||||||||
Microarray_results (16) | |||||||||
Expression_cluster (136) | |||||||||
Interaction | WBInteraction000503638 | ||||||||
Map_info | Map | IV | Position | 1.65867 | Error | 0.001692 | |||
Positive | Positive_clone | ZK616 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00024209 | ||||||||
WBPaper00029438 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |