WormBase Tree Display for Gene: WBGene00005000

WBGene00005000 Evidence: Author_evidence: Patthy L
      Hodgkin JA
  SMap: S_parent: Sequence: C48E7
  Identity: Version: 1
    Name: CGC_name: spp-15
      Sequence_name: C48E7.10
      Molecular_name: C48E7.10
        C48E7.10.1
        CE26915
      Other_name: CELE_C48E7.10 Accession_evidence: NDB BX284601
      Public_name: spp-15
    DB_info: Database: AceView gene 1G826
        WormQTL gene WBGene00005000
        WormFlux gene WBGene00005000
        NDB locus_tag CELE_C48E7.10
        NCBI gene 172318
        RefSeq protein NM_059402.7
        TREEFAM TREEFAM_ID TF342835
        TrEMBL UniProtAcc Q9BIC4
        UniProt_GCRP UniProtAcc Q9BIC4
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:37 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: spp
    Allele (13)
    RNASeq_FPKM (74)
    Ortholog: WBGene00064303 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00033501 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00136825 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      CBOVI.g9096 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g4574 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g6199 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g1569 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g17589 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g7691 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g3684 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g6471 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g21444 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g8323 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g6145 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00240.g7681 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-spp-15 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g20399 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00588.g13207 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_06982 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_002711 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g05805 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_10320200 Caenorhabditis inopinata From_analysis: WormBase-Compara
      Sp34_10320300 Caenorhabditis inopinata From_analysis: WormBase-Compara
      Sp34_10320400 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g1109 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00209891 Caenorhabditis japonica From_analysis: WormBase-Compara
    Paralog: WBGene00004992 Caenorhabditis elegans From_analysis: Panther
      WBGene00004993 Caenorhabditis elegans From_analysis: Panther
      WBGene00004995 Caenorhabditis elegans From_analysis: Panther
      WBGene00004998 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Enriched in several structures, including body wall muscle cell; coelomocyte; distal tip cell; enteric muscle; and head mesodermal cell based on tiling array; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by fifteen chemicals including rotenone; Zidovudine; and Psoralens based on RNA-seq; microarray; and proteomic studies. Is predicted to encode a protein with the following domains: Saposin B type, region 2; Saposin B type domain; Saposin-like type B, region 2; and Saposin-like. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C48E7.10
    Corresponding_transcript: C48E7.10.1
    Other_sequence (17)
    Associated_feature: WBsf649225
      WBsf655276
      WBsf663767
      WBsf219565
      WBsf219566
  Experimental_info: RNAi_result: WBRNAi00042738 Inferred_automatically: RNAi_primary
      WBRNAi00042737 Inferred_automatically: RNAi_primary
      WBRNAi00042744 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1026826
      Expr1032487
      Expr1146730
      Expr2016070
      Expr2034306
    Drives_construct: WBCnstr00035278
    Construct_product: WBCnstr00035278
    Microarray_results (14)
    Expression_cluster (182)
  Map_info: Map: I Position: 0.885131
    Positive: Positive_clone: C48E7 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00024209
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene