WormBase Tree Display for Gene: WBGene00004914
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| WBGene00004914 | Evidence | Paper_evidence | WBPaper00005457 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y116A8C | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | snr-1 | Person_evidence | WBPerson167 | |||||
| Sequence_name | Y116A8C.42 | ||||||||
| Molecular_name | Y116A8C.42 | ||||||||
| Y116A8C.42.1 | |||||||||
| CE23346 | |||||||||
| Other_name | CELE_Y116A8C.42 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | snr-1 | ||||||||
| DB_info | Database | AceView | gene | 4S33 | |||||
| WormQTL | gene | WBGene00004914 | |||||||
| WormFlux | gene | WBGene00004914 | |||||||
| NDB | locus_tag | CELE_Y116A8C.42 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004914|UniProtKB=Q17348 | |||||||
| family | PTHR23338 | ||||||||
| NCBI | gene | 178483 | |||||||
| RefSeq | protein | NM_070626.7 | |||||||
| SwissProt | UniProtAcc | Q17348 | |||||||
| TREEFAM | TREEFAM_ID | TF354302 | |||||||
| UniProt_GCRP | UniProtAcc | Q17348 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | snr | ||||||||
| Allele (23) | |||||||||
| Strain | WBStrain00001675 | ||||||||
| WBStrain00051382 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (25) | |||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00003078 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00004916 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00044916 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | snr-1 encodes an ortholog of human small nuclear ribonucleoprotein Sm D3, a protein that forms part of a heptameric complex required for the biogenesis and function of the snRNPs that catalyze mRNA splicing; in combination with the gene that encodes the human Sm B ortholog (snr-2) snr-1 affects embryonic viability and the nuclear association and localization of P granules in embryos based on an RNAi assay, snr-1 also affects embryonic viability, growth, and fertility based on large-scale RNAi assays; snr-1 is expressed in embryos and is expressed in larvae and adults in muscles of the alimentary system, in body-wall muscle, in seam cells and other unidentified cells. | Paper_evidence | WBPaper00005457 | |||||
| WBPaper00005654 | |||||||||
| WBPaper00006395 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 11 Jul 2005 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA binding activity. Predicted to be involved in spliceosomal snRNP assembly. Located in P granule. Expressed in germ line; gonad; head; and tail. Human ortholog(s) of this gene implicated in systemic lupus erythematosus. Is an ortholog of human SNRPD3 (small nuclear ribonucleoprotein D3 polypeptide). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:9074 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11160) | ||||
| Molecular_info | Corresponding_CDS | Y116A8C.42 | |||||||
| Corresponding_transcript | Y116A8C.42.1 | ||||||||
| Other_sequence (61) | |||||||||
| Associated_feature | WBsf655067 | ||||||||
| WBsf981869 | |||||||||
| Experimental_info | RNAi_result (34) | ||||||||
| Expr_pattern | Expr2229 | ||||||||
| Expr3827 | |||||||||
| Expr6893 | |||||||||
| Expr1013438 | |||||||||
| Expr1032443 | |||||||||
| Expr1158970 | |||||||||
| Expr2015965 | |||||||||
| Expr2034200 | |||||||||
| Drives_construct | WBCnstr00002339 | ||||||||
| WBCnstr00011678 | |||||||||
| Construct_product | WBCnstr00011678 | ||||||||
| Antibody | WBAntibody00000549 | ||||||||
| WBAntibody00000550 | |||||||||
| WBAntibody00000551 | |||||||||
| WBAntibody00000552 | |||||||||
| WBAntibody00000553 | |||||||||
| Microarray_results (28) | |||||||||
| Expression_cluster (153) | |||||||||
| Interaction (323) | |||||||||
| Map_info | Map | IV | Position | 16.1295 | Error | 0.005659 | |||
| Positive | Positive_clone | Y116A8C | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005457 | ||||||||
| WBPaper00026926 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040897 | |||||||||
| WBPaper00046572 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00063976 | |||||||||
| WBPaper00064034 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
