WormBase Tree Display for Gene: WBGene00004914

WBGene00004914 Evidence: Paper_evidence: WBPaper00005457
  SMap: S_parent: Sequence: Y116A8C
  Identity: Version: 1
    Name: CGC_name: snr-1 Person_evidence: WBPerson167
      Sequence_name: Y116A8C.42
      Molecular_name: Y116A8C.42
        Y116A8C.42.1
        CE23346
      Other_name: CELE_Y116A8C.42 Accession_evidence: NDB BX284604
      Public_name: snr-1
    DB_info: Database: AceView gene 4S33
        WormQTL gene WBGene00004914
        WormFlux gene WBGene00004914
        NDB locus_tag CELE_Y116A8C.42
        Panther gene CAEEL|WormBase=WBGene00004914|UniProtKB=Q17348
          family PTHR23338
        NCBI gene 178483
        RefSeq protein NM_070626.7
        SwissProt UniProtAcc Q17348
        TREEFAM TREEFAM_ID TF354302
        UniProt_GCRP UniProtAcc Q17348
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:36 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: snr
    Allele (23)
    Strain: WBStrain00001675
      WBStrain00051382
    RNASeq_FPKM (74)
    GO_annotation (25)
    Ortholog: WBGene00069563 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00023816 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00142063 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00123025 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00227584 Brugia malayi From_analysis: WormBase-Compara
      CSP21.g167 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g20377 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g11278 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP28.g4220 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP28.g9164 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g1034 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g6490 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g10883 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g3911 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g1721 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g11496 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00393.g10210 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_13666.g24321 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-snr-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold70.g436 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00306.g9113 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_22894 Caenorhabditis latens From_analysis: WormBase-Compara
      FL83_22927 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_011946 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g10571 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g20564 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40219200 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g12821 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00242802 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00276959 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00262673 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00288595 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000004137 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0023167 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-5219 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:11160 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1914582 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1597573 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00003078 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00004916 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00044916 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Concise_description: snr-1 encodes an ortholog of human small nuclear ribonucleoprotein Sm D3, a protein that forms part of a heptameric complex required for the biogenesis and function of the snRNPs that catalyze mRNA splicing; in combination with the gene that encodes the human Sm B ortholog (snr-2) snr-1 affects embryonic viability and the nuclear association and localization of P granules in embryos based on an RNAi assay, snr-1 also affects embryonic viability, growth, and fertility based on large-scale RNAi assays; snr-1 is expressed in embryos and is expressed in larvae and adults in muscles of the alimentary system, in body-wall muscle, in seam cells and other unidentified cells. Paper_evidence: WBPaper00005457
            WBPaper00005654
            WBPaper00006395
          Curator_confirmed: WBPerson48
          Date_last_updated: 11 Jul 2005 00:00:00
      Automated_description: Predicted to enable RNA binding activity. Predicted to be involved in spliceosomal snRNP assembly. Located in P granule. Expressed in germ line; gonad; head; and tail. Human ortholog(s) of this gene implicated in systemic lupus erythematosus. Is an ortholog of human SNRPD3 (small nuclear ribonucleoprotein D3 polypeptide). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:9074 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:11160)
  Molecular_info: Corresponding_CDS: Y116A8C.42
    Corresponding_transcript: Y116A8C.42.1
    Other_sequence (61)
    Associated_feature: WBsf655067
      WBsf981869
  Experimental_info: RNAi_result (34)
    Expr_pattern: Expr2229
      Expr3827
      Expr6893
      Expr1013438
      Expr1032443
      Expr1158970
      Expr2015965
      Expr2034200
    Drives_construct: WBCnstr00002339
      WBCnstr00011678
    Construct_product: WBCnstr00011678
    Antibody: WBAntibody00000549
      WBAntibody00000550
      WBAntibody00000551
      WBAntibody00000552
      WBAntibody00000553
    Microarray_results (28)
    Expression_cluster (153)
    Interaction (323)
  Map_info: Map: IV Position: 16.1295 Error: 0.005659
    Positive: Positive_clone: Y116A8C Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00005457
    WBPaper00026926
    WBPaper00038491
    WBPaper00040897
    WBPaper00046572
    WBPaper00049828
    WBPaper00055090
    WBPaper00063976
    WBPaper00064034
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene