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WormBase Tree Display for Gene: WBGene00004322

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Name Class

WBGene00004322EvidencePerson_evidenceWBPerson338
SMapS_parentSequenceE03A3
IdentityVersion1
NameCGC_namercq-5Person_evidenceWBPerson338
Sequence_nameE03A3.2
Molecular_nameE03A3.2
E03A3.2.1
CE51498
Other_nameCELE_E03A3.2Accession_evidenceNDBBX284603
Public_namercq-5
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:34WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrcq
Allele (133)
StrainWBStrain00031548
WBStrain00032406
RNASeq_FPKM (74)
GO_annotation (18)
OrthologWBGene00061604Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00039238Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00139894Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00223364Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g6112Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g4265Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g6586Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g6581Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g1380Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g17038Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g11754Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g20935Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g16690Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g5009Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g16829Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_06280.g20173Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-rcq-5Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g17502Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00975.g17240Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_19907Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_008863Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04598Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04600Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_30001810Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g7363Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00209584Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00246349Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00104787Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00263162Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00263163Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00296656Trichuris murisFrom_analysisWormBase-Compara
WBGene00301066Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0027375Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-071214-1Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:9950Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:2156841Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1310823Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00001865Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00006944Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00019334Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionConcise_descriptionrcq-5 encodes an ATP-dependent DNA helicase that is a member of the RecQ family of DNA helicases; loss of rcq-5 activity via RNAi results in decreased lifespan and increased sensitivity to ionizing radiation; RCQ-5, a nuclear protein, is expressed in germ cells and oocytes, as well as in somatic cells from embryogenesis through adulthood, with highest levels of postembryonic expression seen in intestinal cells; mutations in rcq-5 exhibit synthetic lethality in combination with mutations in rtel-1, which encodes a functional analog of yeast Srs2 and vertebrate RTEL1, which negatively regulates homologous recombination.Paper_evidenceWBPaper00006268
WBPaper00032312
Curator_confirmedWBPerson1843
Date_last_updated18 Jan 2010 00:00:00
Automated_descriptionPredicted to enable 3'-5' DNA helicase activity and four-way junction helicase activity. Predicted to be involved in DNA unwinding involved in DNA replication and double-strand break repair via homologous recombination. Located in nucleus. Expressed in several structures, including germ line; intestinal cell; and oocyte. Is an ortholog of human RECQL5 (RecQ like helicase 5).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSE03A3.2
Corresponding_CDS_historyE03A3.2:wp252
Corresponding_transcriptE03A3.2.1
Other_sequence (28)
Associated_featureWBsf650952
WBsf666739
WBsf991998
WBsf991999
WBsf226455
WBsf226456
WBsf226457
Experimental_infoRNAi_resultWBRNAi00043621Inferred_automaticallyRNAi_primary
WBRNAi00005072Inferred_automaticallyRNAi_primary
WBRNAi00095187Inferred_automaticallyRNAi_primary
WBRNAi00083944Inferred_automaticallyRNAi_primary
WBRNAi00064085Inferred_automaticallyRNAi_primary
WBRNAi00075596Inferred_automaticallyRNAi_primary
WBRNAi00083945Inferred_automaticallyRNAi_primary
WBRNAi00095186Inferred_automaticallyRNAi_primary
WBRNAi00012657Inferred_automaticallyRNAi_primary
Expr_patternExpr2820
Expr2821
Expr2822
Expr1020707
Expr1032147
Expr1147612
Expr2015280
Expr2033514
Drives_constructWBCnstr00010971
WBCnstr00035564
Construct_productWBCnstr00035564
AntibodyWBAntibody00000700
Microarray_results (17)
Expression_cluster (99)
Interaction (27)
Map_infoMapIIIPosition-4.01168Error0.003979
PositivePositive_cloneE03A3Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point4627
5482
Pseudo_map_position
Reference (11)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene