WormBase Tree Display for Gene: WBGene00003588
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| WBGene00003588 | SMap | S_parent | Sequence | ZC155 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nex-1 | |||||||
| Sequence_name | ZC155.1 | ||||||||
| Molecular_name | ZC155.1 | ||||||||
| ZC155.1.1 | |||||||||
| CE01431 | |||||||||
| Other_name | CELE_ZC155.1 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | nex-1 | ||||||||
| DB_info | Database | AceView | gene | 3G315 | |||||
| WormQTL | gene | WBGene00003588 | |||||||
| WormFlux | gene | WBGene00003588 | |||||||
| NDB | locus_tag | CELE_ZC155.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003588|UniProtKB=G5EEA8 | |||||||
| family | PTHR10502 | ||||||||
| NCBI | gene | 175714 | |||||||
| RefSeq | protein | NM_065708.10 | |||||||
| TrEMBL | UniProtAcc | G5EEA8 | |||||||
| UniProt_GCRP | UniProtAcc | G5EEA8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nex | ||||||||
| Allele (23) | |||||||||
| Legacy_information | [C.elegansII] NMK. Encodes protein with 42% identity to bovine annexin IV. Antibody stains pharyngeal grinder, gland cells, spermathecal folds. [CGC] | ||||||||
| Strain | WBStrain00035608 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (19) | |||||||||
| Ortholog (33) | |||||||||
| Paralog | WBGene00003589 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00003590 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003591 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | nex-1 encodes an annexin, a member of a family of calcium-dependent phospholipid binding proteins; NEX-1 is required for efficient engulfment of apoptotic cell corpses in the pharynx, and may also function in other membrane fusion events, such as exocytosis; NEX-1 in vitro can bind phosphatidylserine, phosphatidylinositol, heparin, heparan sulfate, and chondroitin sulfate; NEX-1 is expressed in the pharynx, hypodermal cells, the vulva, the uterus, the spermathecal valve, and yolk granules of maturing oocytes. | Paper_evidence | WBPaper00003602 | |||||
| WBPaper00004309 | |||||||||
| WBPaper00005874 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables heparin binding activity and phospholipid binding activity. Involved in engulfment of apoptotic cell. Located in intracellular membrane-bounded organelle and plasma membrane. Expressed in hypodermis; pharynx; spermathecal-uterine junction; uterine toroidal epithelial cell; and vulva. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZC155.1 | |||||||
| Corresponding_transcript | ZC155.1.1 | ||||||||
| Other_sequence | TLC00236_1 | ||||||||
| EX565409.1 | |||||||||
| BQ381252.1 | |||||||||
| Acan_isotig10128 | |||||||||
| PPC19017_1 | |||||||||
| DN190632.1 | |||||||||
| FE909107.1 | |||||||||
| JI179429.1 | |||||||||
| AS01230 | |||||||||
| HG03755 | |||||||||
| HCC01655_1 | |||||||||
| ASC08250_1 | |||||||||
| ASC02421_1 | |||||||||
| DVC02687_1 | |||||||||
| CRC06670_1 | |||||||||
| HC03352 | |||||||||
| DN191287.1 | |||||||||
| DN190665.1 | |||||||||
| DN190717.1 | |||||||||
| Tcol_isotig16712 | |||||||||
| Tcol_isotig16783 | |||||||||
| FE916732.1 | |||||||||
| FK804835.1 | |||||||||
| TX00403 | |||||||||
| HBC17690_1 | |||||||||
| AS03910 | |||||||||
| AAC00004_1 | |||||||||
| ES880568.1 | |||||||||
| HC05626 | |||||||||
| ACC10173_1 | |||||||||
| FE915510.1 | |||||||||
| EX916700.1 | |||||||||
| AS01639 | |||||||||
| DN190461.1 | |||||||||
| EX910179.1 | |||||||||
| AS09767 | |||||||||
| EV850941.1 | |||||||||
| EX828485.1 | |||||||||
| EG025402.1 | |||||||||
| Tcir_isotig06843 | |||||||||
| TCC02199_1 | |||||||||
| Tcol_isotig14132 | |||||||||
| JI175774.1 | |||||||||
| DN190528.1 | |||||||||
| ASC07215_1 | |||||||||
| AE01028 | |||||||||
| FJ768021.1 | |||||||||
| DN190508.1 | |||||||||
| DN191276.1 | |||||||||
| DN191143.1 | |||||||||
| TX00248 | |||||||||
| AI205471.1 | |||||||||
| HBC03960_1 | |||||||||
| HG02851 | |||||||||
| EX536429.1 | |||||||||
| HC01389 | |||||||||
| AS00806 | |||||||||
| FE911528.1 | |||||||||
| JO475531.1 | |||||||||
| EX009540.1 | |||||||||
| CBC09452_1 | |||||||||
| HC06123 | |||||||||
| DN190701.1 | |||||||||
| Oden_isotig28811 | |||||||||
| OVC01381_1 | |||||||||
| AF469059.1 | |||||||||
| FE913463.1 | |||||||||
| Dviv_isotig13678 | |||||||||
| BMC02129_1 | |||||||||
| JI180819.1 | |||||||||
| AA611004.1 | |||||||||
| AS01637 | |||||||||
| NB09989 | |||||||||
| FE916974.1 | |||||||||
| Oden_isotig17938 | |||||||||
| DN191329.1 | |||||||||
| TDC02079_1 | |||||||||
| JI215435.1 | |||||||||
| CR11530 | |||||||||
| ACC10736_1 | |||||||||
| EX555144.1 | |||||||||
| AYC00198_1 | |||||||||
| DN190550.1 | |||||||||
| FK806262.1 | |||||||||
| DN190709.1 | |||||||||
| Name_isotig01652 | |||||||||
| HC09835 | |||||||||
| AS01016 | |||||||||
| CB036286.1 | |||||||||
| TLC00203_1 | |||||||||
| HGC10481_1 | |||||||||
| NBC04190_1 | |||||||||
| DN191145.1 | |||||||||
| TCC00673_1 | |||||||||
| TX01034 | |||||||||
| Hbac_isotig01697 | |||||||||
| JI173166.1 | |||||||||
| ACC01305_1 | |||||||||
| HGC01138_1 | |||||||||
| JO468379.1 | |||||||||
| DN190682.1 | |||||||||
| CR11571 | |||||||||
| EX828209.1 | |||||||||
| FK806964.1 | |||||||||
| ASC00730_1 | |||||||||
| DN191153.1 | |||||||||
| CR02603 | |||||||||
| AS04107 | |||||||||
| CGC01364_1 | |||||||||
| DN190928.1 | |||||||||
| ES413745.1 | |||||||||
| ASC00851_1 | |||||||||
| HG03646 | |||||||||
| CJC02600_1 | |||||||||
| DN191233.1 | |||||||||
| ES880425.1 | |||||||||
| OVC03804 | |||||||||
| FE911406.1 | |||||||||
| Associated_feature | WBsf654958 | ||||||||
| WBsf717068 | |||||||||
| WBsf717895 | |||||||||
| WBsf992337 | |||||||||
| WBsf1014858 | |||||||||
| WBsf224881 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00107729 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00087553 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00067291 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027665 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00021578 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00080498 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005118 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00107730 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00058747 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041886 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1209 | ||||||||
| Expr1210 | |||||||||
| Expr1560 | |||||||||
| Expr8283 | |||||||||
| Expr1022217 | |||||||||
| Expr1031638 | |||||||||
| Expr1162168 | |||||||||
| Expr2013979 | |||||||||
| Expr2032219 | |||||||||
| Drives_construct | WBCnstr00010152 | ||||||||
| WBCnstr00036022 | |||||||||
| Construct_product | WBCnstr00036022 | ||||||||
| Antibody | WBAntibody00000107 | ||||||||
| WBAntibody00001198 | |||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (227) | |||||||||
| Interaction (36) | |||||||||
| WBProcess | WBbiopr:00000015 | ||||||||
| Map_info | Map | III | Position | -1.97258 | Error | 0.014291 | |||
| Positive | Positive_clone | ZC155 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4167 | |||||||
| 4513 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (17) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
