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WormBase Tree Display for Gene: WBGene00003588

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Name Class

WBGene00003588SMapS_parentSequenceZC155
IdentityVersion1
NameCGC_namenex-1
Sequence_nameZC155.1
Molecular_nameZC155.1
ZC155.1.1
CE01431
Other_nameCELE_ZC155.1Accession_evidenceNDBBX284603
Public_namenex-1
DB_infoDatabaseAceViewgene3G315
WormQTLgeneWBGene00003588
WormFluxgeneWBGene00003588
NDBlocus_tagCELE_ZC155.1
PanthergeneCAEEL|WormBase=WBGene00003588|UniProtKB=G5EEA8
familyPTHR10502
NCBIgene175714
RefSeqproteinNM_065708.10
TrEMBLUniProtAccG5EEA8
UniProt_GCRPUniProtAccG5EEA8
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:32WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnex
Allele (23)
Legacy_information[C.elegansII] NMK. Encodes protein with 42% identity to bovine annexin IV. Antibody stains pharyngeal grinder, gland cells, spermathecal folds. [CGC]
StrainWBStrain00035608
RNASeq_FPKM (74)
GO_annotation (19)
OrthologWBGene00099462Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00069160Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00040014Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00102728Pristionchus pacificusFrom_analysisOMA
WBGene00161811Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00126299Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00207969Caenorhabditis japonicaFrom_analysisTreeFam
CBOVI.g5246Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g15303Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g6720Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g19767Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g3710Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g20828Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g12160Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g19688Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g3115Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g7840Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00011.g839Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_13852.g24413Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-nex-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g12541Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01581.g21869Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_06665.g36854Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_11058Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_008485Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04835Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_30024900Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g7668Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00215213Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00217494Caenorhabditis japonicaFrom_analysisWormBase-Compara
ZFIN:ZDB-GENE-010406-1Danio rerioFrom_analysisOrthoFinder
PhylomeDB
MGI:1917037Mus musculusFrom_analysisOMA
OrthoFinder
PhylomeDB
RGD:1307545Rattus norvegicusFrom_analysisOMA
OrthoFinder
PhylomeDB
ParalogWBGene00003589Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003590Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003591Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionnex-1 encodes an annexin, a member of a family of calcium-dependent phospholipid binding proteins; NEX-1 is required for efficient engulfment of apoptotic cell corpses in the pharynx, and may also function in other membrane fusion events, such as exocytosis; NEX-1 in vitro can bind phosphatidylserine, phosphatidylinositol, heparin, heparan sulfate, and chondroitin sulfate; NEX-1 is expressed in the pharynx, hypodermal cells, the vulva, the uterus, the spermathecal valve, and yolk granules of maturing oocytes.Paper_evidenceWBPaper00003602
WBPaper00004309
WBPaper00005874
Curator_confirmedWBPerson1843
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionEnables heparin binding activity and phospholipid binding activity. Involved in engulfment of apoptotic cell. Located in intracellular membrane-bounded organelle and plasma membrane. Expressed in hypodermis; pharynx; spermathecal-uterine junction; uterine toroidal epithelial cell; and vulva.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSZC155.1
Corresponding_transcriptZC155.1.1
Other_sequence (118)
Associated_featureWBsf654958
WBsf717068
WBsf717895
WBsf992337
WBsf1014858
WBsf224881
Experimental_infoRNAi_resultWBRNAi00107729Inferred_automaticallyRNAi_primary
WBRNAi00087553Inferred_automaticallyRNAi_primary
WBRNAi00067291Inferred_automaticallyRNAi_primary
WBRNAi00027665Inferred_automaticallyRNAi_primary
WBRNAi00021578Inferred_automaticallyRNAi_primary
WBRNAi00080498Inferred_automaticallyRNAi_primary
WBRNAi00005118Inferred_automaticallyRNAi_primary
WBRNAi00107730Inferred_automaticallyRNAi_primary
WBRNAi00058747Inferred_automaticallyRNAi_primary
WBRNAi00041886Inferred_automaticallyRNAi_primary
Expr_patternExpr1209
Expr1210
Expr1560
Expr8283
Expr1022217
Expr1031638
Expr1162168
Expr2013979
Expr2032219
Drives_constructWBCnstr00010152
WBCnstr00036022
Construct_productWBCnstr00036022
AntibodyWBAntibody00000107
WBAntibody00001198
Microarray_results (24)
Expression_cluster (227)
Interaction (36)
WBProcessWBbiopr:00000015
Map_infoMapIIIPosition-1.97258Error0.014291
PositivePositive_cloneZC155Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4167
4513
Pseudo_map_position
ReferenceWBPaper00002424
WBPaper00003602
WBPaper00004309
WBPaper00005874
WBPaper00010986
WBPaper00021721
WBPaper00024585
WBPaper00025192
WBPaper00025760
WBPaper00028908
WBPaper00031238
WBPaper00033090
WBPaper00033099
WBPaper00038491
WBPaper00039985
WBPaper00055090
WBPaper00055785
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene