WormBase Tree Display for Gene: WBGene00003588
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| WBGene00003588 | SMap | S_parent | Sequence | ZC155 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nex-1 | |||||||
| Sequence_name | ZC155.1 | ||||||||
| Molecular_name | ZC155.1 | ||||||||
| ZC155.1.1 | |||||||||
| CE01431 | |||||||||
| Other_name | CELE_ZC155.1 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | nex-1 | ||||||||
| DB_info | Database | AceView | gene | 3G315 | |||||
| WormQTL | gene | WBGene00003588 | |||||||
| WormFlux | gene | WBGene00003588 | |||||||
| NDB | locus_tag | CELE_ZC155.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003588|UniProtKB=G5EEA8 | |||||||
| family | PTHR10502 | ||||||||
| NCBI | gene | 175714 | |||||||
| RefSeq | protein | NM_065708.10 | |||||||
| TrEMBL | UniProtAcc | G5EEA8 | |||||||
| UniProt_GCRP | UniProtAcc | G5EEA8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nex | ||||||||
| Allele (23) | |||||||||
| Legacy_information | [C.elegansII] NMK. Encodes protein with 42% identity to bovine annexin IV. Antibody stains pharyngeal grinder, gland cells, spermathecal folds. [CGC] | ||||||||
| Strain | WBStrain00035608 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (19) | |||||||||
| Ortholog (33) | |||||||||
| Paralog | WBGene00003589 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00003590 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003591 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | nex-1 encodes an annexin, a member of a family of calcium-dependent phospholipid binding proteins; NEX-1 is required for efficient engulfment of apoptotic cell corpses in the pharynx, and may also function in other membrane fusion events, such as exocytosis; NEX-1 in vitro can bind phosphatidylserine, phosphatidylinositol, heparin, heparan sulfate, and chondroitin sulfate; NEX-1 is expressed in the pharynx, hypodermal cells, the vulva, the uterus, the spermathecal valve, and yolk granules of maturing oocytes. | Paper_evidence | WBPaper00003602 | |||||
| WBPaper00004309 | |||||||||
| WBPaper00005874 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables heparin binding activity and phospholipid binding activity. Involved in engulfment of apoptotic cell. Located in intracellular membrane-bounded organelle and plasma membrane. Expressed in hypodermis; pharynx; spermathecal-uterine junction; uterine toroidal epithelial cell; and vulva. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZC155.1 | |||||||
| Corresponding_transcript | ZC155.1.1 | ||||||||
| Other_sequence (118) | |||||||||
| Associated_feature | WBsf654958 | ||||||||
| WBsf717068 | |||||||||
| WBsf717895 | |||||||||
| WBsf992337 | |||||||||
| WBsf1014858 | |||||||||
| WBsf224881 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00107729 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00087553 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00067291 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027665 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00021578 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00080498 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005118 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00107730 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00058747 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041886 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1209 | ||||||||
| Expr1210 | |||||||||
| Expr1560 | |||||||||
| Expr8283 | |||||||||
| Expr1022217 | |||||||||
| Expr1031638 | |||||||||
| Expr1162168 | |||||||||
| Expr2013979 | |||||||||
| Expr2032219 | |||||||||
| Drives_construct | WBCnstr00010152 | ||||||||
| WBCnstr00036022 | |||||||||
| Construct_product | WBCnstr00036022 | ||||||||
| Antibody | WBAntibody00000107 | ||||||||
| WBAntibody00001198 | |||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (227) | |||||||||
| Interaction | WBInteraction000006745 | ||||||||
| WBInteraction000030991 | |||||||||
| WBInteraction000031325 | |||||||||
| WBInteraction000126582 | |||||||||
| WBInteraction000126583 | |||||||||
| WBInteraction000193305 | |||||||||
| WBInteraction000369373 | |||||||||
| WBInteraction000384205 | |||||||||
| WBInteraction000386935 | |||||||||
| WBInteraction000392136 | |||||||||
| WBInteraction000392760 | |||||||||
| WBInteraction000397975 | |||||||||
| WBInteraction000421821 | |||||||||
| WBInteraction000424415 | |||||||||
| WBInteraction000437422 | |||||||||
| WBInteraction000439394 | |||||||||
| WBInteraction000443572 | |||||||||
| WBInteraction000457860 | |||||||||
| WBInteraction000460485 | |||||||||
| WBInteraction000461147 | |||||||||
| WBInteraction000512414 | |||||||||
| WBInteraction000512415 | |||||||||
| WBInteraction000512416 | |||||||||
| WBInteraction000512417 | |||||||||
| WBInteraction000520804 | |||||||||
| WBInteraction000551584 | |||||||||
| WBInteraction000553052 | |||||||||
| WBInteraction000554512 | |||||||||
| WBInteraction000558963 | |||||||||
| WBInteraction000560900 | |||||||||
| WBInteraction000561972 | |||||||||
| WBInteraction000564091 | |||||||||
| WBInteraction000568030 | |||||||||
| WBInteraction000572547 | |||||||||
| WBInteraction000580198 | |||||||||
| WBInteraction000582375 | |||||||||
| WBProcess | WBbiopr:00000015 | ||||||||
| Map_info | Map | III | Position | -1.97258 | Error | 0.014291 | |||
| Positive | Positive_clone | ZC155 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4167 | |||||||
| 4513 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (17) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
