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WormBase Tree Display for Gene: WBGene00003480

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Name Class

WBGene00003480SMapS_parentSequenceF54H5
IdentityVersion2
NameCGC_nameklf-3Paper_evidenceWBPaper00033136
Sequence_nameF54H5.4
Molecular_nameF54H5.4a
F54H5.4a.1
CE01967
F54H5.4b
CE37379
F54H5.4b.1
F54H5.4b.2
Other_namemua-1Paper_evidenceWBPaper00033136
CELE_F54H5.4Accession_evidenceNDBBX284602
Public_nameklf-3
DB_infoDatabaseAceViewgene2G911
WormQTLgeneWBGene00003480
WormFluxgeneWBGene00003480
NDBlocus_tagCELE_F54H5.4
PanthergeneCAEEL|WormBase=WBGene00003480|UniProtKB=Q65ZG6
familyPTHR23235
NCBIgene191713
RefSeqproteinNM_001027033.2
NM_001027034.6
SwissProtUniProtAccQ65ZG6
UniProt_GCRPUniProtAccQ65ZG6
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:32WBPerson1971EventImportedInitial conversion from geneace
203 Aug 2009 11:56:38WBPerson9133Name_changeCGC_nameklf-3
StatusLive
Gene_info (11)
Disease_infoExperimental_modelDOID:3146Homo sapiensPaper_evidenceWBPaper00039810
Curator_confirmedWBPerson324
Date_last_updated31 Jul 2023 00:00:00
DOID:9970Homo sapiensPaper_evidenceWBPaper00033136
Curator_confirmedWBPerson38202
Date_last_updated12 Jun 2018 00:00:00
Models_disease_assertedWBDOannot00000544
Molecular_infoCorresponding_CDSF54H5.4a
F54H5.4b
Corresponding_CDS_historyF54H5.4:wp130
Corresponding_transcriptF54H5.4a.1
F54H5.4b.1
F54H5.4b.2
Other_sequence (11)
Associated_featureWBsf644310
WBsf716521
WBsf988209
WBsf988210
WBsf988211
WBsf988212
WBsf988213
WBsf1012400
WBsf1012401
WBsf221471
Transcription_factorWBTranscriptionFactor000192
Experimental_infoRNAi_result (28)
Expr_pattern (13)
Drives_constructWBCnstr00013465
WBCnstr00014161
WBCnstr00014330
WBCnstr00014334
WBCnstr00014343
WBCnstr00037952
Construct_productWBCnstr00013465
WBCnstr00037952
AntibodyWBAntibody00002431
Microarray_results (23)
Expression_clusterWBPaper00031040:TGF-beta_adult_upregulated
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00036375:enriched_in_PVD_OLL
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:germline-precursors_embryo_enriched
WBPaper00037950:germline-precursors_embryo_SelectivelyEnriched
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:hypodermis_larva_enriched
WBPaper00037950:hypodermis_larva_SelectivelyEnriched
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00041071:spe-44_upregulated
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00044030:nhr-8(hd117)_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00045316:prg-1_upregulated_L3
WBPaper00045390:tunicamycin_downregulated
WBPaper00045401:N.parisii_64h_upregulated
WBPaper00045417:128Q-huntingtin_downreglated
WBPaper00046338:intestine_unique
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
WBPaper00048988:daf-2(e1370)_daf-16(mu86)_upregulated_neuron
WBPaper00048988:neuron_expressed
WBPaper00049498:npr-1(ur89)_regulated_5
WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
WBPaper00049626:UNC-75_target
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050332:skn-1(RNAi)_downregulated
WBPaper00050344:ASER-neuron_enriched
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_adult_25C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:intestine_expressed
WBPaper00051265:F4_hrde-1(tm1200)_downregulated
WBPaper00051404:alg-1(gk214)_upregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053295:lin-22(icb38)_upregulated
WBPaper00053295:lin-22(ot269)_upregulated
WBPaper00053302:alovudine_24h_regulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053664:ins-11(tm1053)_downregulated
WBPaper00053771:up_at_dpy-7(e88)
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055226:ADR-2_target_N2
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055354:Rifampicin-Psora_downregulated
WBPaper00055482:pmt-2(RNAi)_upregulated
WBPaper00055827:pfd-6(gk493446)_downregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056139:soil-microbiota_upregulated
WBPaper00056284:ints-9(RNAi)_upregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00056809:smn-1(ok355)_upregulated
WBPaper00056826:hmc_biased
WBPaper00056855:his-72(uge40)_upregulated
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057006:DietaryRestriction_downregulated
WBPaper00057140:meg-3(tm4259)_meg-4(ax2026)_downregulated
WBPaper00057288:iff-1(RNAi)_upregulated_transcript
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058948:PA14_downregulated
WBPaper00058958:10mGy-irradiation-72h_upregulated
WBPaper00059421:daf-1(m40)_upregulated
WBPaper00059471:EGL-43_interacting
WBPaper00059604:fluvastatin_downregulated_N2
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00060014:set-2(zr2012)_downregulated
WBPaper00060278:atp-2(RNAi)_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00061007:HB101_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061081:E.faecalis_upregulated_skpo-1(ok1640)
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:B_F_K_Kp_U_Y
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00061479:mep-1(ne4629)_upregulated
WBPaper00061527:saeg-1_18803-mpz-2_15880
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064107:lin-35(n745)_upregulated
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064769:him-17(me24)_upregulated
WBPaper00064871:PA14_upregulated_AWA
WBPaper00065029:cadmium_upregulated
WBPaper00065086:JU1400_N.ausubeli_regulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065734:unc-25(e156)_upregulated
WBPaper00065835:mtH2S-AP39-L1-treatment_upregulated_Day1
WBPaper00065841:11_3
WBPaper00065841:21_0
WBPaper00065841:30_1
WBPaper00065841:146_0
WBPaper00065877:rege-1(imm070)_upregulated_PA14
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00025141:N2_Expressed_Genes
WBPaper00026980:intestine_enriched
WBPaper00028482:PA14_upregulated
WBPaper00028789:PA14_vs_OP50_upregulated_8hr
WBPaper00029437:dcr-1_upregulated
WBPaper00031252:AIN-2_IP_enriched
WBPaper00034661:AgNPs_downregulated
WBPaper00034739:N2moreDR1350
WBPaper00035084:embryo_enriched_AIN-2_IP
WBPaper00035084:L1_enriched_AIN-2_IP
WBPaper00035084:L2_enriched_AIN-2_IP
WBPaper00035084:L3_enriched_AIN-2_IP
WBPaper00035084:L4_enriched_AIN-2_IP
WBPaper00035873:dpy-10_regulated
WBPaper00036286:Pattern_I
WBPaper00037695:LD_DD_6-day
WBPaper00038060:SUMO-1_downregulated
WBPaper00038172:tax-6null_up_regulated
WBPaper00038304:octr-1_regulated
WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2up
WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
WBPaper00040858:eQTL_regulated_developing
WBPaper00040985:AIN-2_L4_intestine
WBPaper00041002:HF_3d_2.0mM_Up
WBPaper00041002:HQ_3d_2.0mM_Up
WBPaper00041211:RPW-24_Up
WBPaper00044091:Bpseudomallei_induced_4h
WBPaper00044091:Bpseudomallei_induced_8h
WBPaper00044091:Bpseudomallei_induced_12h
WBPaper00045673:colistin_upregulated
WBPaper00045960:L4-lethargus_upregulated
WBPaper00048989:N2_rapamycin_upregulated
Interaction (43)
Map_infoMapIIPosition-0.05726Error0.005228
Well_ordered
PositivePositive_cloneF54H5Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point2245
2251
2252
2253
2254
2255
4643
Pos_neg_data6713
6714
6715
6716
6717
6718
Reference (43)
RemarkThis gene was previously identified as mua-1, but this is incorrect. mua-1 gene identity is currently uncertain; it may correspond to F54H5.3 and/or F54H5.5, both of which are affected by the defining mua-1 mutation rh160, which also affects klf-3 (F54H5.4).
MethodGene