WormBase Tree Display for Gene: WBGene00002980

WBGene00002980 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: C32D5
  Identity: Version: 2
    Name: CGC_name: lgg-1 Person_evidence: WBPerson321
      Sequence_name: C32D5.9
      Molecular_name: C32D5.9
        C32D5.9.1
        CE01849
      Other_name: 2G636 Accession_evidence: EMBL AF326943
        atg-8.1 Person_evidence: WBPerson649
        CELE_C32D5.9 Accession_evidence: NDB BX284602
      Public_name: lgg-1
    DB_info: Database: AceView gene 2G636
        WormQTL gene WBGene00002980
        WormFlux gene WBGene00002980
        NDB locus_tag CELE_C32D5.9
        Panther gene CAEEL|WormBase=WBGene00002980|UniProtKB=Q09490
          family PTHR10969
        NCBI gene 174050
        RefSeq protein NM_062876.8
        SwissProt UniProtAcc Q09490
        TREEFAM TREEFAM_ID TF314556
        UniProt_GCRP UniProtAcc Q09490
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:30 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 29 Feb 2008 11:29:00 WBPerson2970 Name_change: Other_name: atg-8.1
    Status: Live
  Gene_info (11)
  Modifies_disease: DOID:332
  Modifies_disease_in_annotation: WBDOannot00001227
  Molecular_info: Corresponding_CDS: C32D5.9
    Corresponding_transcript: C32D5.9.1
    Other_sequence: EX552095.1
      PTC00017_1
      MIC07072_1
      ES568585.1
      EY458361.1
      SR04625
      AYC00748_1
      GO249943.1
      SR04527
      XIC05001_1
      GO249835.1
      FC809814.1
      AE01025
      Oden_isotig25984
      GP02812
      Tcol_isotig17620
      SR04362
      CR02926
      SR04698
      FC818405.1
      ACC21857_1
      PPC05981_1
      LSC00376_1
      SRC00164_1
      SR04707
      XI00821
      EY467431.1
      PPC00318_1
      SSC00192_1
      GR13694
      EX015152.1
      MAC01076_1
      EX558759.1
      CR02461
      EX912055.1
      NAC01941_1
      SRC00571_1
      NB12619
      CRC00821_1
      GRC00798_1
      FC812737.1
      NBC09588_1
      PT00019
      NB06890
      MI09161
      ACC17274_1
      SR04843
      MCC01917_1
      CB037451.1
      SR00369
      CBC00885_1
      SR04615
      TDC01450_1
      Acan_isotig06536
      HCC06213_1
      Tcol_isotig11667
      CJC01557_1
      PT00024
      GPC01335_1
      XIC01049_1
      GO249972.1
      JI477962.1
      JI173194.1
      FG347307.1
      Oden_isotig18063
      PTC03638_1
      Name_isotig07091
      NBC06270_1
      TSC01571_1
      ACC01177_1
      AYC01236_1
      EX913426.1
      ES741567.1
      CRC08112_1
      SR05220
      HC04830
      FC811920.1
      CR02638
      ES739119.1
      CJC18415_1
      EX011654.1
      BG661383.1
      JI469578.1
      GP00078
      ASC38728_1
      XIC02261_1
      ES413690.1
      EY471473.1
      RSC00062_1
      SR00909
      SR01101
      FC817228.1
      HBC01043_1
      MH10839
      ACC01905_1
      HGC02423_1
      AE01445
      GO249254.1
      FG582043.1
      EY464737.1
      GR11811
      HGC06083_1
      XI02948
      BE240833.1
      CJC00085_1
      Dviv_isotig14913
      OOC03870_1
      EX561734.1
      BU088191.1
      Hbac_isotig00574
      SR04604
      PTC00219_1
      SRC06517_1
      Acan_isotig07026
      Tcir_isotig27360
      MI03472
      NBC00020_1
      FC811660.1
      SS01532
      MHC08966_1
      GO249004.1
      SR01099
      GO249399.1
      AM743527.1
      NB07198
      FK804313.1
      FC810991.1
      ES741672.1
      PP00628
      FG580346.1
      HG11685
      MA01763
      TS00441
      BU087855.1
      FC820918.1
      HG12023
      FC816396.1
      Dviv_isotig14912
      GO249188.1
      SR02944
      SR00853
      EX557066.1
      Tcol_isotig11666
      FK803283.1
      NB07703
      BU088292.1
      HG03477
      PT00639
      TS01732
      GP02456
      PT03934
      XI04652
      CJC07317_1
      FE908995.1
      Tcir_isotig09836
      FC811908.1
      EY471791.1
      FG619418.1
      HC01977
      DN557040.1
      BXC00896_1
      FC821547.1
      FC813879.1
      EX502152.1
      MC03250
      XI04492
      CRC08668_1
      Acan_isotig06537
      GP00291
      FC817071.1
      HGC00128_1
      CR10130
      FC817501.1
      EX915604.1
      MI07785
      EX560203.1
      NB08714
      HCC05564_1
      SR05025
      Hbac_isotig00573
      MIC02989_1
    Associated_feature (11)
  Experimental_info: RNAi_result (59)
    Expr_pattern (17)
    Drives_construct (18)
    Construct_product (37)
    Antibody: WBAntibody00002128
      WBAntibody00002775
      WBAntibody00002776
      WBAntibody00002864
      WBAntibody00002888
      WBAntibody00002907
      WBAntibody00003022
    Microarray_results (18)
    Expression_cluster: WBPaper00032097:CGH-1-associated-mRNA
      WBPaper00032528:L3_enriched
      WBPaper00033065:isp-1-1(qm150)_upregulated
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00038118:aak-2(gt33)_upregulated
      WBPaper00038118:stress_upregulated_N2
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044736:oscillating_dev_expression
      WBPaper00045050:csr-1(hypomorph)_downregulated
      WBPaper00045314:S.aureus-induced_N2
      WBPaper00045521:Oogenic
      WBPaper00045774:clk-1_upregulated
      WBPaper00045974:NSM_enriched_totalRNA_RNAseq
      WBPaper00046024:sleep_upregulated_oscillating
      WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
      WBPaper00046497:B.thuringiensis_upregulated_protein
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:cco-1(RNAi)_upregulated
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050199:hsf-1(ok600)_upregulated
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050344:ASER-neuron_enriched
      WBPaper00050448:KGB-1-induced
      WBPaper00050468:hlh-30-dependent_Cry5B_regulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050514:CEBP-1_interacting
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051257:Levamisole_upregulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053023:nlg-1(ok259)_downregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053295:lin-22(ot267)_downregulated
      WBPaper00053295:lin-22(ot269)_downregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_24h_regulated
      WBPaper00053388:dauer_regulated_Cluster4
      WBPaper00053713:Pheromone-induced_postdauer_vs_control_downregulated
      WBPaper00053713:Starvation-induced_postdauer_vs_control_upregulated
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00055049:S.gordonii_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00055969:electromagnetic-field_upregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056139:soil-microbiota_upregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00057068:Cadmium_upregulated
      WBPaper00057288:Cold_downregulated_protein
      WBPaper00057288:iff-1(RNAi)_upregulated_protein
      WBPaper00058948:PA14_downregulated
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059471:EGL-43_interacting
      WBPaper00059763:neuron_expressed
      WBPaper00059824:rnp-6(dh1127)_regulated_OP50
      WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
      WBPaper00059895:wounding_upregulated
      WBPaper00059987:Wounding_upregulated
      WBPaper00060014:set-2(zr2012)_upregulated
      WBPaper00060084:cco-1(RNAi)_upregulated_N2
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061527:chd-7_16664-jmjd-3.1
      WBPaper00061651:AIZ_enriched
      WBPaper00061651:AVG_enriched
      WBPaper00061651:PDE_enriched
      WBPaper00061651:VB01_enriched
      WBPaper00061651:VB02_enriched
      WBPaper00061651:VB_enriched
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062354:H.zoospora_6h_regulated
      WBPaper00062440:crh-1(n3315)_downregulated
      WBPaper00062456:doxycycline_downregulated_CB4856_protein
      WBPaper00064055:trl-1(cas1077)_downregulated_non-starved
      WBPaper00064055:trl-1(cas1077)_downregulated_starved
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA
      WBPaper00064532:pals-25(icb98)_upregulated
      WBPaper00064716:paraquat_downregulated
      WBPaper00064735:bet-1(RNAi)_vs_N2_upregulated
      WBPaper00064871:hypoxia_downregulated_F1
      WBPaper00065086:JU1400_N.ferruginous_regulated
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065258:anchor-cell_enriched
      WBPaper00065945:epidermis-rpoa-2(-)_downregulated_transcript
      WBPaper00065995:M.humicola-extract_downregulated_N2
      WBPaper00066062:xrep-4(lax137)_upregulated
      cgc4386_cluster_4_3
      cgc4489_group_9
      WBPaper00025032:cluster_45
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00030839:Larval_Pan_Neuronal
      WBPaper00030985:Enterococcus_faecalis_upregulated
      WBPaper00030985:Photorhabdus_luminescens_upregulated
      WBPaper00030985:Serratia_marcesens_downregulated
      WBPaper00032948:StarveUp2
      WBPaper00034739:N2moreDR1350
      WBPaper00034757:up_by_oxidative_stress
      WBPaper00035227:heat_shock_regulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00036123:Atrazine_regulated
      WBPaper00036286:Pattern_F
      WBPaper00037901:GLD-1_mRNA_targets
      WBPaper00038231:Cry5B_1.5-fold_upregulated
      WBPaper00038231:Cry5B_2-fold_upregulated
      WBPaper00040184:hcf-1up_sir-2.1up_daf-2up
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00040858:eQTL_regulated_old
      WBPaper00041370:spg-7(RNAi)_upregulated
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00042178:hlh-29(tm284)_upregulated
      WBPaper00044091:Bpseudomallei_induced_2h
      WBPaper00045015:nhr-25(RNAi)_upregulated
      WBPaper00045960:L1-L4-lethargus_upregulated
      WBPaper00045960:L4-lethargus_upregulated
      WBPaper00048989:N2_rapamycin_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(83_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_ME
      [cgc6390]:Cluster_A
    Interaction (287)
    WBProcess: WBbiopr:00000003
  Map_info: Map: II Position: -0.380826 Error: 0.000183
    Positive: Positive_clone: C32D5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (176)
  Remark: Sequence connection from [Kimura Y]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene