WormBase Tree Display for Gene: WBGene00001701
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| WBGene00001701 | Evidence | Paper_evidence | WBPaper00003717 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Person_evidence | WBPerson83 | ||||||||
| SMap | S_parent | Sequence | F02D8 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | grd-12 | Person_evidence | WBPerson83 | |||||
| Sequence_name | F02D8.2 | ||||||||
| Molecular_name | F02D8.2 | ||||||||
| F02D8.2.1 | |||||||||
| CE09180 | |||||||||
| Other_name | CELE_F02D8.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | grd-12 | ||||||||
| DB_info | Database | AceView | gene | 5P457 | |||||
| WormQTL | gene | WBGene00001701 | |||||||
| WormFlux | gene | WBGene00001701 | |||||||
| NDB | locus_tag | CELE_F02D8.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001701|UniProtKB=Q19120 | |||||||
| family | PTHR31967 | ||||||||
| NCBI | gene | 184079 | |||||||
| RefSeq | protein | NM_074281.3 | |||||||
| TREEFAM | TREEFAM_ID | TF316390 | |||||||
| TrEMBL | UniProtAcc | Q19120 | |||||||
| UniProt_GCRP | UniProtAcc | Q19120 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | grd | ||||||||
| Allele (29) | |||||||||
| Strain | WBStrain00002425 | ||||||||
| WBStrain00002828 | |||||||||
| WBStrain00037080 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (27) | |||||||||
| Paralog | WBGene00001695 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00001696 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00001697 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00001698 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00001705 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00001704 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Structured_description | Concise_description | grd-12 encodes a hedgehog-like protein, with an N-terminal signalsequence, a central low-complexity proline-rich domain, and a C-terminalGround domain; GRD-12 is expressed in intestine, rectal epithelium,undefined head and tail cells, vulva, and hypodermis; the Ground domainis predicted to form a cysteine-crosslinked protein involved inintercellular signalling, and it has subtle similarity to the N-terminalHedge domain of HEDGEHOG proteins; GRD-12 is required for normal growthto full size, locomotion, and vulval morphogenesis; all of theserequirements may reflect common defects in cholesterol-dependenthedgehog-like signalling or in vesicle trafficking. | Paper_evidence | WBPaper00003717 | |||||
| WBPaper00006525 | |||||||||
| WBPaper00026841 | |||||||||
| WBPaper00027263 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 05 Nov 2006 00:00:00 | ||||||||
| Automated_description | Expressed in head; tail; and vulC. Is predicted to encode a protein with the following domain: Ground-like domain. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F02D8.2 | |||||||
| Corresponding_transcript | F02D8.2.1 | ||||||||
| Other_sequence | CRC03860_1 | ||||||||
| SRC01216_1 | |||||||||
| MA02649 | |||||||||
| CSC02281_1 | |||||||||
| CR09410 | |||||||||
| FC816597.1 | |||||||||
| FD516088.1 | |||||||||
| Associated_feature | WBsf662106 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00077001 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00012777 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00077024 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030572 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043810 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1727 | ||||||||
| Expr4436 | |||||||||
| Expr5661 | |||||||||
| Expr5662 | |||||||||
| Expr1018977 | |||||||||
| Expr1031016 | |||||||||
| Expr1147783 | |||||||||
| Expr2012226 | |||||||||
| Expr2030462 | |||||||||
| Drives_construct | WBCnstr00003036 | ||||||||
| WBCnstr00004509 | |||||||||
| WBCnstr00011999 | |||||||||
| WBCnstr00036756 | |||||||||
| Construct_product | WBCnstr00036756 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (137) | |||||||||
| Interaction (24) | |||||||||
| WBProcess | WBbiopr:00000123 | ||||||||
| Map_info | Map | V | Position | 7.06093 | Error | 0.016463 | |||
| Positive | Positive_clone | F02D8 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003717 | ||||||||
| WBPaper00026841 | |||||||||
| WBPaper00028754 | |||||||||
| WBPaper00031006 | |||||||||
| WBPaper00031588 | |||||||||
| WBPaper00064105 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
