WormBase Tree Display for Gene: WBGene00001704
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| WBGene00001704 | Evidence | Person_evidence | WBPerson83 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y87G2A | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | grd-15 | Person_evidence | WBPerson83 | |||||
| Sequence_name | Y87G2A.15 | ||||||||
| Molecular_name | Y87G2A.15 | ||||||||
| Y87G2A.15.1 | |||||||||
| CE34232 | |||||||||
| Other_name | CELE_Y87G2A.15 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | grd-15 | ||||||||
| DB_info | Database | AceView | gene | 1O157 | |||||
| WormQTL | gene | WBGene00001704 | |||||||
| WormFlux | gene | WBGene00001704 | |||||||
| NDB | locus_tag | CELE_Y87G2A.15 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001704|UniProtKB=Q7YXB4 | |||||||
| family | PTHR31967 | ||||||||
| NCBI | gene | 3565288 | |||||||
| RefSeq | protein | NM_001026660.6 | |||||||
| TREEFAM | TREEFAM_ID | TF316390 | |||||||
| TrEMBL | UniProtAcc | Q7YXB4 | |||||||
| UniProt_GCRP | UniProtAcc | Q7YXB4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | grd | ||||||||
| Allele (45) | |||||||||
| Strain | WBStrain00006138 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (22) | |||||||||
| Paralog (26) | |||||||||
| Structured_description | Concise_description | grd-15 encodes a hedgehog-like protein, with an N-terminal signalsequence and a C-terminal Ground domain; GRD-15 is expressed in amphidsocket cells; the Ground domain is predicted to form acysteine-crosslinked protein involved in intercellular signalling, andit has subtle similarity to the N-terminal Hedge domain of HEDGEHOGproteins; grd-15 has no obvious function in RNAi assays. | Paper_evidence | WBPaper00003717 | |||||
| WBPaper00006525 | |||||||||
| WBPaper00026841 | |||||||||
| WBPaper00027263 | |||||||||
| Date_last_updated | 18 Jan 2007 00:00:00 | ||||||||
| Automated_description | Enriched in arc ant V based on single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and eat-2 based on tiling array; microarray; and RNA-seq studies. Is affected by ten chemicals including mianserin; Zidovudine; and Psoralens based on RNA-seq studies. Is predicted to encode a protein with the following domain: Ground-like domain. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y87G2A.15 | |||||||
| Corresponding_transcript | Y87G2A.15.1 | ||||||||
| Other_sequence | PT03980 | ||||||||
| ES412002.1 | |||||||||
| MI05722 | |||||||||
| PTC03705_1 | |||||||||
| SR00583 | |||||||||
| HBC21834_1 | |||||||||
| Associated_feature | WBsf643806 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00004845 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00076851 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00077004 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1042 | ||||||||
| Expr7134 | |||||||||
| Expr1013066 | |||||||||
| Expr1031018 | |||||||||
| Expr1162020 | |||||||||
| Expr2012229 | |||||||||
| Expr2030465 | |||||||||
| Drives_construct | WBCnstr00001930 | ||||||||
| WBCnstr00004511 | |||||||||
| Microarray_results (15) | |||||||||
| Expression_cluster (80) | |||||||||
| WBProcess | WBbiopr:00000123 | ||||||||
| Map_info | Map | I | Position | 21.4682 | Error | 0.006807 | |||
| Positive | Positive_clone | Y87G2A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026841 | ||||||||
| WBPaper00028754 | |||||||||
| WBPaper00031588 | |||||||||
| WBPaper00064105 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
