WormBase Tree Display for Gene: WBGene00001633
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| WBGene00001633 | SMap | S_parent | Sequence | Y66A7AR | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | gly-8 | Person_evidence | WBPerson228 | |||||
| Sequence_name | Y66A7A.6 | ||||||||
| Molecular_name | Y66A7A.6 | ||||||||
| Y66A7A.6.1 | |||||||||
| CE15691 | |||||||||
| Other_name | CELE_Y66A7A.6 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | gly-8 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gly | ||||||||
| Allele (69) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00001628 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00001629 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001630 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001631 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001632 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001635 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001636 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00012934 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | gly-8 encodes a predicted transmembrane polypeptide N-acetylgalactosaminyl transferase (ppGaNTase) similar to the essential Drosophila ppGaNTase encoded by Pgant35A; by homology, GLY-8 is predicted to function as a Golgi enzyme that catalyzes transfer of N-acetylgalactosamine to serine and threonine-containing acceptor peptides, thus initiating mucin-type O-glycosylation; as loss of gly-8 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of GLY-8 in C. elegans development and/or behavior is not yet known. | Paper_evidence | WBPaper00003042 | |||||
| WBPaper00005408 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable Notch binding activity and polypeptide N-acetylgalactosaminyltransferase activity. Predicted to be involved in protein O-linked glycosylation and regulation of Notch signaling pathway. Predicted to be located in Golgi apparatus. Is an ortholog of human GALNT11 (polypeptide N-acetylgalactosaminyltransferase 11) and GALNTL5 (polypeptide N-acetylgalactosaminyltransferase like 5). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y66A7A.6 | |||||||
| Corresponding_transcript | Y66A7A.6.1 | ||||||||
| Other_sequence (40) | |||||||||
| Associated_feature | WBsf645629 | ||||||||
| WBsf994445 | |||||||||
| WBsf994446 | |||||||||
| WBsf1016044 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00057927 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00021252 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011727 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037715 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006034 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1014644 | ||||||||
| Expr1030980 | |||||||||
| Expr1161357 | |||||||||
| Expr2012148 | |||||||||
| Expr2030384 | |||||||||
| Drives_construct | WBCnstr00036809 | ||||||||
| Construct_product | WBCnstr00036809 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (274) | |||||||||
| Interaction (16) | |||||||||
| Map_info | Map | III | Position | 11.4318 | Error | 0.065596 | |||
| Positive | Positive_clone | Y66A7A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 5114 | |||||||
| 4239 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003042 | ||||||||
| WBPaper00005408 | |||||||||
| WBPaper00017620 | |||||||||
| WBPaper00026630 | |||||||||
| WBPaper00029024 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061547 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
