WormBase Tree Display for Gene: WBGene00001633
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WBGene00001633 | SMap | S_parent | Sequence | Y66A7AR | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | gly-8 | Person_evidence | WBPerson228 | |||||
Sequence_name | Y66A7A.6 | ||||||||
Molecular_name | Y66A7A.6 | ||||||||
Y66A7A.6.1 | |||||||||
CE15691 | |||||||||
Other_name | CELE_Y66A7A.6 | Accession_evidence | NDB | BX284603 | |||||
Public_name | gly-8 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | gly | ||||||||
Allele | WBVar00180213 | ||||||||
WBVar02132799 | |||||||||
WBVar01995962 | |||||||||
WBVar00863767 | |||||||||
WBVar00863768 | |||||||||
WBVar00863769 | |||||||||
WBVar01852365 | |||||||||
WBVar00863770 | |||||||||
WBVar00863771 | |||||||||
WBVar00863772 | |||||||||
WBVar00863773 | |||||||||
WBVar02057321 | |||||||||
WBVar00863774 | |||||||||
WBVar00863775 | |||||||||
WBVar00863776 | |||||||||
WBVar00863777 | |||||||||
WBVar00863778 | |||||||||
WBVar00863779 | |||||||||
WBVar00863780 | |||||||||
WBVar01702258 | |||||||||
WBVar00863781 | |||||||||
WBVar00863782 | |||||||||
WBVar00863783 | |||||||||
WBVar00863784 | |||||||||
WBVar00863785 | |||||||||
WBVar00863786 | |||||||||
WBVar00863787 | |||||||||
WBVar00863788 | |||||||||
WBVar00863789 | |||||||||
WBVar01567767 | |||||||||
WBVar01567768 | |||||||||
WBVar00863790 | |||||||||
WBVar00863791 | |||||||||
WBVar00863792 | |||||||||
WBVar00863793 | |||||||||
WBVar00863794 | |||||||||
WBVar01723946 | |||||||||
WBVar02013200 | |||||||||
WBVar01499774 | |||||||||
WBVar01646567 | |||||||||
WBVar01646568 | |||||||||
WBVar01646569 | |||||||||
WBVar01646570 | |||||||||
WBVar01646571 | |||||||||
WBVar01270356 | |||||||||
WBVar00262861 | |||||||||
WBVar01646572 | |||||||||
WBVar01646573 | |||||||||
WBVar01270357 | |||||||||
WBVar01646574 | |||||||||
WBVar00262864 | |||||||||
WBVar00254031 | |||||||||
WBVar00262867 | |||||||||
WBVar00250171 | |||||||||
WBVar01416634 | |||||||||
WBVar01499811 | |||||||||
WBVar00409828 | |||||||||
WBVar00409829 | |||||||||
WBVar00409830 | |||||||||
WBVar00409831 | |||||||||
WBVar00409832 | |||||||||
WBVar00409833 | |||||||||
WBVar00409834 | |||||||||
WBVar00409835 | |||||||||
WBVar00409836 | |||||||||
WBVar00409837 | |||||||||
WBVar00409838 | |||||||||
WBVar00409839 | |||||||||
WBVar01919353 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (12) | |||||||||
Ortholog (36) | |||||||||
Paralog | WBGene00001628 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00001629 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00001630 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00001631 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00001632 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00001635 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00001636 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00012934 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | gly-8 encodes a predicted transmembrane polypeptide N-acetylgalactosaminyl transferase (ppGaNTase) similar to the essential Drosophila ppGaNTase encoded by Pgant35A; by homology, GLY-8 is predicted to function as a Golgi enzyme that catalyzes transfer of N-acetylgalactosamine to serine and threonine-containing acceptor peptides, thus initiating mucin-type O-glycosylation; as loss of gly-8 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of GLY-8 in C. elegans development and/or behavior is not yet known. | Paper_evidence | WBPaper00003042 | |||||
WBPaper00005408 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable Notch binding activity and polypeptide N-acetylgalactosaminyltransferase activity. Predicted to be involved in protein O-linked glycosylation and regulation of Notch signaling pathway. Predicted to be located in Golgi apparatus. Is an ortholog of human GALNT11 (polypeptide N-acetylgalactosaminyltransferase 11) and GALNTL5 (polypeptide N-acetylgalactosaminyltransferase like 5). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y66A7A.6 | |||||||
Corresponding_transcript | Y66A7A.6.1 | ||||||||
Other_sequence (40) | |||||||||
Associated_feature | WBsf645629 | ||||||||
WBsf994445 | |||||||||
WBsf994446 | |||||||||
WBsf1016044 | |||||||||
Experimental_info | RNAi_result | WBRNAi00057927 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00021252 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00011727 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00037715 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00006034 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1014644 | ||||||||
Expr1030980 | |||||||||
Expr1161357 | |||||||||
Expr2012148 | |||||||||
Expr2030384 | |||||||||
Drives_construct | WBCnstr00036809 | ||||||||
Construct_product | WBCnstr00036809 | ||||||||
Microarray_results (22) | |||||||||
Expression_cluster (274) | |||||||||
Interaction (16) | |||||||||
Map_info | Map | III | Position | 11.4318 | Error | 0.065596 | |||
Positive | Positive_clone | Y66A7A | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 5114 | |||||||
4239 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00003042 | ||||||||
WBPaper00005408 | |||||||||
WBPaper00017620 | |||||||||
WBPaper00026630 | |||||||||
WBPaper00029024 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00061547 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |