WormBase Tree Display for Gene: WBGene00001632
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| WBGene00001632 | SMap | S_parent | Sequence | Y46H3A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | gly-7 | Person_evidence | WBPerson228 | |||||
| Sequence_name | Y46H3A.6 | ||||||||
| Molecular_name | Y46H3A.6a | ||||||||
| Y46H3A.6a.1 | |||||||||
| CE24309 | |||||||||
| Y46H3A.6b | |||||||||
| CE50984 | |||||||||
| Y46H3A.6c | |||||||||
| CE51035 | |||||||||
| Y46H3A.6b.1 | |||||||||
| Y46H3A.6c.1 | |||||||||
| Other_name | CELE_Y46H3A.6 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | gly-7 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gly | ||||||||
| Allele (103) | |||||||||
| Strain | WBStrain00036143 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (37) | |||||||||
| Paralog | WBGene00001628 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00001629 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001630 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001631 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001635 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001636 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00012934 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001633 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | gly-7 encodes an N-acetylgalactosaminyltransferase that exhibits activity when expressed in COS7 cells. | Paper_evidence | WBPaper00003042 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable polypeptide N-acetylgalactosaminyltransferase activity. Predicted to be involved in protein O-linked glycosylation. Predicted to be located in Golgi apparatus. Is an ortholog of human GALNT7 (polypeptide N-acetylgalactosaminyltransferase 7). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y46H3A.6a | |||||||
| Y46H3A.6b | |||||||||
| Y46H3A.6c | |||||||||
| Corresponding_transcript | Y46H3A.6a.1 | ||||||||
| Y46H3A.6b.1 | |||||||||
| Y46H3A.6c.1 | |||||||||
| Other_sequence (25) | |||||||||
| Associated_feature | WBsf652484 | ||||||||
| WBsf233361 | |||||||||
| WBsf233362 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00027754 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00056703 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1029031 | ||||||||
| Expr1030979 | |||||||||
| Expr1160173 | |||||||||
| Expr2012147 | |||||||||
| Expr2030383 | |||||||||
| Drives_construct | WBCnstr00036810 | ||||||||
| Construct_product | WBCnstr00036810 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (129) | |||||||||
| Interaction | WBInteraction000042663 | ||||||||
| WBInteraction000042664 | |||||||||
| WBInteraction000134032 | |||||||||
| WBInteraction000134036 | |||||||||
| WBInteraction000134038 | |||||||||
| WBInteraction000134039 | |||||||||
| WBInteraction000136848 | |||||||||
| WBInteraction000324385 | |||||||||
| WBInteraction000569111 | |||||||||
| WBInteraction000573424 | |||||||||
| Map_info | Map | V | Position | -17.0676 | Error | 0.056896 | |||
| Positive | Positive_clone | Y46H3A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5178 | |||||||
| 4830 | |||||||||
| 4861 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003042 | ||||||||
| WBPaper00005408 | |||||||||
| WBPaper00017620 | |||||||||
| WBPaper00026630 | |||||||||
| WBPaper00029024 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
