WormBase Tree Display for Gene: WBGene00001630
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| WBGene00001630 | SMap | S_parent | Sequence | Y39E4B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | gly-5 | Person_evidence | WBPerson228 | |||||
| Sequence_name | Y39E4B.12 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_Y39E4B.12 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | gly-5 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gly | ||||||||
| Allele (279) | |||||||||
| Strain | WBStrain00036184 | ||||||||
| WBStrain00036231 | |||||||||
| WBStrain00037734 | |||||||||
| WBStrain00037771 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog (42) | |||||||||
| Paralog | WBGene00001628 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00001629 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001631 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001632 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001635 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001633 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001636 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00012934 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | gly-5 encodes a UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase; GLY-5 isoforms exhibit UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase activity in vitro. | Paper_evidence | WBPaper00003042 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson1843 | |||||||||
| Date_last_updated | 11 Apr 2012 00:00:00 | ||||||||
| Automated_description | Enables polypeptide N-acetylgalactosaminyltransferase activity. Involved in protein O-linked glycosylation via threonine. Predicted to be located in Golgi apparatus. Human ortholog(s) of this gene implicated in colorectal cancer. Is an ortholog of human GALNT12 (polypeptide N-acetylgalactosaminyltransferase 12); GALNT4 (polypeptide N-acetylgalactosaminyltransferase 4); and POC1B-GALNT4 (POC1B-GALNT4 readthrough). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:9256 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:19877) | ||||
| Molecular_info | Corresponding_CDS | Y39E4B.12a | |||||||
| Y39E4B.12b | |||||||||
| Y39E4B.12c | |||||||||
| Corresponding_transcript | Y39E4B.12a.1 | ||||||||
| Y39E4B.12a.2 | |||||||||
| Y39E4B.12b.1 | |||||||||
| Y39E4B.12b.2 | |||||||||
| Y39E4B.12c.1 | |||||||||
| Y39E4B.12c.2 | |||||||||
| Other_sequence (108) | |||||||||
| Associated_feature (19) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00056236 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00002699 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027752 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056237 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1017972 | ||||||||
| Expr1030977 | |||||||||
| Expr1159726 | |||||||||
| Expr2012145 | |||||||||
| Expr2030381 | |||||||||
| Drives_construct | WBCnstr00036811 | ||||||||
| Construct_product | WBCnstr00036811 | ||||||||
| Microarray_results (37) | |||||||||
| Expression_cluster (125) | |||||||||
| Interaction (14) | |||||||||
| Map_info | Map | III | Position | 21.0711 | Error | 0.032355 | |||
| Positive | Positive_clone | Y39E4B | Inferred_automatically | Inferred from CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 5203 | |||||||
| 5286 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003042 | ||||||||
| WBPaper00005408 | |||||||||
| WBPaper00026630 | |||||||||
| WBPaper00029024 | |||||||||
| WBPaper00030714 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061547 | |||||||||
| WBPaper00063976 | |||||||||
| WBPaper00065080 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
