WormBase Tree Display for Gene: WBGene00001428
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| WBGene00001428 | SMap | S_parent | Sequence | C05C8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | fkb-3 | Person_evidence | WBPerson466 | |||||
| Sequence_name | C05C8.3 | ||||||||
| Molecular_name | C05C8.3 | ||||||||
| C05C8.3.1 | |||||||||
| CE07921 | |||||||||
| Other_name | dao-1 | ||||||||
| CELE_C05C8.3 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | fkb-3 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fkb | ||||||||
| Allele (18) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00027780 | ||||||||
| 00027781 | |||||||||
| 00027782 | |||||||||
| 00027783 | |||||||||
| 00027784 | |||||||||
| 00027785 | |||||||||
| 00027786 | |||||||||
| 00027787 | |||||||||
| 00108694 | |||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00001430 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001429 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001426 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00001427 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00001431 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00001432 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00001433 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | fkb-3 encodes a peptidylprolyl cis/trans isomerase homologous to mammalian FK506 immunosuppressant-binding protein 9; FKB-3 expression is positively regulated by signaling through the DAF-2 insulin receptor-like pathway and the activity of the DAF-16 fork-head transcription factor suggesting that FKB-3 could play a role in metabolism and longevity; however, as loss of FKB-3 function via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of FKB-3 in C. elegans development and/or behavior is not yet known; FKB-3 contains a predicted endoplasmic reticulum (ER) retention sequence and is thus proposed to localize to the ER. | Paper_evidence | WBPaper00004285 | |||||
| WBPaper00005073 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein folding. Predicted to be located in endoplasmic reticulum. Expressed in hypodermis. Is an ortholog of human FKBP9 (FKBP prolyl isomerase 9). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C05C8.3 | |||||||
| Corresponding_transcript | C05C8.3.1 | ||||||||
| Other_sequence (48) | |||||||||
| Associated_feature | WBsf646928 | ||||||||
| WBsf231957 | |||||||||
| WBsf231958 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00028480 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00039708 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00039707 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00065435 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00065434 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000445 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00010185 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00065433 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076082 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00065432 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr8301 | ||||||||
| Expr8304 | |||||||||
| Expr16137 | |||||||||
| Expr1029094 | |||||||||
| Expr1030853 | |||||||||
| Expr1143807 | |||||||||
| Expr2011797 | |||||||||
| Expr2030035 | |||||||||
| Drives_construct | WBCnstr00013248 | ||||||||
| WBCnstr00036957 | |||||||||
| Construct_product | WBCnstr00013248 | ||||||||
| WBCnstr00036957 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (252) | |||||||||
| Interaction (73) | |||||||||
| Map_info | Map | V | Position | 0.635816 | Error | 0.001765 | |||
| Positive | Positive_clone | C05C8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4303 | |||||||
| 4307 | |||||||||
| 5359 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004285 | ||||||||
| WBPaper00005073 | |||||||||
| WBPaper00017047 | |||||||||
| WBPaper00023823 | |||||||||
| WBPaper00026884 | |||||||||
| WBPaper00029155 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
