WormBase Tree Display for Gene: WBGene00001149
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| WBGene00001149 | SMap | S_parent | Sequence | K02A4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | bcat-1 | |||||||
| Sequence_name | K02A4.1 | ||||||||
| Molecular_name | K02A4.1 | ||||||||
| K02A4.1.1 | |||||||||
| CE03457 | |||||||||
| Other_name | ECA39 | Accession_evidence | EMBL | U21550 | |||||
| eca-39 | |||||||||
| CELE_K02A4.1 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | bcat-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:23 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 07 Jul 2004 10:08:30 | WBPerson1971 | Name_change | CGC_name | bcat-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | bcat | ||||||||
| Allele (46) | |||||||||
| Strain | WBStrain00001179 | ||||||||
| WBStrain00001764 | |||||||||
| WBStrain00047484 | |||||||||
| Component_of_genotype | WBGenotype00000032 | ||||||||
| WBGenotype00000033 | |||||||||
| WBGenotype00000034 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (29) | |||||||||
| Ortholog (45) | |||||||||
| Paralog | WBGene00012855 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | bcat-1 encodes a branched-chain amino acid aminotransferase that, by homology, is predicted to catalyze the first reaction in the catabolism of essential branched-chain amino acids such as leucine, isoleucine, and valine; in C. elegans, large-scale RNA-mediated interference (RNAi) screens indicate that bcat-1 activity is required for embryonic and larval development. | Paper_evidence | WBPaper00004424 | |||||
| WBPaper00004651 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 23 Apr 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable branched-chain-amino-acid transaminase activity. Involved in branched-chain amino acid catabolic process; embryo development; and nematode larval development. Acts upstream of or within determination of adult lifespan. Located in mitochondrion. Is an ortholog of human BCAT2 (branched chain amino acid transaminase 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K02A4.1 | |||||||
| Corresponding_transcript | K02A4.1.1 | ||||||||
| Other_sequence (65) | |||||||||
| Associated_feature | WBsf717381 | ||||||||
| WBsf717382 | |||||||||
| WBsf982257 | |||||||||
| WBsf1007453 | |||||||||
| WBsf1007454 | |||||||||
| WBsf1007455 | |||||||||
| WBsf1024141 | |||||||||
| WBsf236520 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00000799 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00027821 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113698 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00016424 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00090701 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113697 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00049654 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1431 | ||||||||
| Chronogram1998 | |||||||||
| Expr6303 | |||||||||
| Expr9526 | |||||||||
| Expr12614 | |||||||||
| Expr1016785 | |||||||||
| Expr1030730 | |||||||||
| Expr1153380 | |||||||||
| Expr2009579 | |||||||||
| Expr2027816 | |||||||||
| Drives_construct | WBCnstr00002071 | ||||||||
| WBCnstr00004210 | |||||||||
| WBCnstr00022449 | |||||||||
| WBCnstr00037065 | |||||||||
| WBCnstr00038736 | |||||||||
| Construct_product | WBCnstr00014091 | ||||||||
| WBCnstr00022449 | |||||||||
| WBCnstr00037065 | |||||||||
| WBCnstr00038736 | |||||||||
| Regulate_expr_cluster | WBPaper00060459:bcat-1(RNAi)_downregulated | ||||||||
| WBPaper00060459:bcat-1(RNAi)_upregulated | |||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (202) | |||||||||
| Interaction (153) | |||||||||
| Map_info | Map | X | Position | 8.78096 | |||||
| Positive | Positive_clone | K02A4 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (15) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
