WormBase Tree Display for Gene: WBGene00001149

WBGene00001149 SMap: S_parent: Sequence: K02A4
  Identity: Version: 2
    Name: CGC_name: bcat-1
      Sequence_name: K02A4.1
      Molecular_name: K02A4.1
        K02A4.1.1
        CE03457
      Other_name: ECA39 Accession_evidence: EMBL U21550
        eca-39
        CELE_K02A4.1 Accession_evidence: NDB BX284606
      Public_name: bcat-1
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:23 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 07 Jul 2004 10:08:30 WBPerson1971 Name_change: CGC_name: bcat-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: bcat
    Allele (46)
    Strain: WBStrain00001179
      WBStrain00001764
      WBStrain00047484
    Component_of_genotype: WBGenotype00000032
      WBGenotype00000033
      WBGenotype00000034
    RNASeq_FPKM (74)
    GO_annotation (29)
    Ortholog (45)
    Paralog: WBGene00012855 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Concise_description: bcat-1 encodes a branched-chain amino acid aminotransferase that, by homology, is predicted to catalyze the first reaction in the catabolism of essential branched-chain amino acids such as leucine, isoleucine, and valine; in C. elegans, large-scale RNA-mediated interference (RNAi) screens indicate that bcat-1 activity is required for embryonic and larval development. Paper_evidence: WBPaper00004424
            WBPaper00004651
          Curator_confirmed: WBPerson1843
          Date_last_updated: 23 Apr 2007 00:00:00
      Automated_description: Predicted to enable branched-chain-amino-acid transaminase activity. Involved in branched-chain amino acid catabolic process; embryo development; and nematode larval development. Acts upstream of or within determination of adult lifespan. Located in mitochondrion. Is an ortholog of human BCAT2 (branched chain amino acid transaminase 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: K02A4.1
    Corresponding_transcript: K02A4.1.1
    Other_sequence (65)
    Associated_feature: WBsf717381
      WBsf717382
      WBsf982257
      WBsf1007453
      WBsf1007454
      WBsf1007455
      WBsf1024141
      WBsf236520
  Experimental_info: RNAi_result: WBRNAi00000799 Inferred_automatically: RNAi_primary
      WBRNAi00027821 Inferred_automatically: RNAi_primary
      WBRNAi00113698 Inferred_automatically: RNAi_primary
      WBRNAi00016424 Inferred_automatically: RNAi_primary
      WBRNAi00090701 Inferred_automatically: RNAi_primary
      WBRNAi00113697 Inferred_automatically: RNAi_primary
      WBRNAi00049654 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram1431
      Chronogram1998
      Expr6303
      Expr9526
      Expr12614
      Expr1016785
      Expr1030730
      Expr1153380
      Expr2009579
      Expr2027816
    Drives_construct: WBCnstr00002071
      WBCnstr00004210
      WBCnstr00022449
      WBCnstr00037065
      WBCnstr00038736
    Construct_product: WBCnstr00014091
      WBCnstr00022449
      WBCnstr00037065
      WBCnstr00038736
    Regulate_expr_cluster: WBPaper00060459:bcat-1(RNAi)_downregulated
      WBPaper00060459:bcat-1(RNAi)_upregulated
    Microarray_results (24)
    Expression_cluster (202)
    Interaction: WBInteraction000111074
      WBInteraction000136012
      WBInteraction000143095
      WBInteraction000146285
      WBInteraction000153647
      WBInteraction000153648
      WBInteraction000155163
      WBInteraction000168613
      WBInteraction000170491
      WBInteraction000171072
      WBInteraction000184604
      WBInteraction000187967
      WBInteraction000204517
      WBInteraction000205442
      WBInteraction000217266
      WBInteraction000217693
      WBInteraction000219869
      WBInteraction000222582
      WBInteraction000224413
      WBInteraction000232007
      WBInteraction000232460
      WBInteraction000241598
      WBInteraction000241889
      WBInteraction000247505
      WBInteraction000249051
      WBInteraction000257888
      WBInteraction000259150
      WBInteraction000260569
      WBInteraction000267760
      WBInteraction000270061
      WBInteraction000277158
      WBInteraction000278415
      WBInteraction000284687
      WBInteraction000288223
      WBInteraction000288361
      WBInteraction000293022
      WBInteraction000295595
      WBInteraction000306333
      WBInteraction000314258
      WBInteraction000315248
      WBInteraction000317395
      WBInteraction000317935
      WBInteraction000320738
      WBInteraction000321683
      WBInteraction000324382
      WBInteraction000325764
      WBInteraction000334434
      WBInteraction000335998
      WBInteraction000337901
      WBInteraction000340282
      WBInteraction000345011
      WBInteraction000346437
      WBInteraction000347656
      WBInteraction000348563
      WBInteraction000348859
      WBInteraction000350189
      WBInteraction000355561
      WBInteraction000356066
      WBInteraction000359744
      WBInteraction000360375
      WBInteraction000364599
      WBInteraction000364841
      WBInteraction000365241
      WBInteraction000369297
      WBInteraction000371060
      WBInteraction000377789
      WBInteraction000380258
      WBInteraction000381787
      WBInteraction000384862
      WBInteraction000391101
      WBInteraction000392107
      WBInteraction000394187
      WBInteraction000396178
      WBInteraction000402625
      WBInteraction000404846
      WBInteraction000406670
      WBInteraction000409994
      WBInteraction000412180
      WBInteraction000413093
      WBInteraction000413310
      WBInteraction000413416
      WBInteraction000413708
      WBInteraction000418272
      WBInteraction000419827
      WBInteraction000421433
      WBInteraction000422885
      WBInteraction000428773
      WBInteraction000430047
      WBInteraction000431432
      WBInteraction000432135
      WBInteraction000432290
      WBInteraction000433162
      WBInteraction000434906
      WBInteraction000443261
      WBInteraction000444312
      WBInteraction000445949
      WBInteraction000445990
      WBInteraction000446842
      WBInteraction000448939
      WBInteraction000449416
      WBInteraction000450668
      WBInteraction000451848
      WBInteraction000461194
      WBInteraction000462353
      WBInteraction000462735
      WBInteraction000462979
      WBInteraction000463215
      WBInteraction000463251
      WBInteraction000463252
      WBInteraction000463363
      WBInteraction000463527
      WBInteraction000463710
      WBInteraction000463943
      WBInteraction000464022
      WBInteraction000464258
      WBInteraction000464307
      WBInteraction000465140
      WBInteraction000465229
      WBInteraction000465371
      WBInteraction000465386
      WBInteraction000465412
      WBInteraction000465740
      WBInteraction000465844
      WBInteraction000466459
      WBInteraction000467134
      WBInteraction000467234
      WBInteraction000467373
      WBInteraction000467434
      WBInteraction000467536
      WBInteraction000468251
      WBInteraction000468262
      WBInteraction000468735
      WBInteraction000469023
      WBInteraction000470639
      WBInteraction000470875
      WBInteraction000472452
      WBInteraction000472470
      WBInteraction000472691
      WBInteraction000473288
      WBInteraction000473370
      WBInteraction000473454
      WBInteraction000473578
      WBInteraction000473748
      WBInteraction000474072
      WBInteraction000474219
      WBInteraction000474662
      WBInteraction000474776
      WBInteraction000474886
      WBInteraction000475047
      WBInteraction000475335
      WBInteraction000567868
      WBInteraction000577542
      WBInteraction000579742
  Map_info: Map: X Position: 8.78096
    Positive: Positive_clone: K02A4 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (15)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene