WormBase Tree Display for Gene: WBGene00001149
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WBGene00001149 | SMap | S_parent | Sequence | K02A4 | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | bcat | |||||
Allele (46) | ||||||
Strain | WBStrain00001179 | |||||
WBStrain00001764 | ||||||
WBStrain00047484 | ||||||
Component_of_genotype | WBGenotype00000032 | |||||
WBGenotype00000033 | ||||||
WBGenotype00000034 | ||||||
RNASeq_FPKM (74) | ||||||
GO_annotation (29) | ||||||
Ortholog (45) | ||||||
Paralog | WBGene00012855 | Caenorhabditis elegans | From_analysis | TreeFam | ||
Panther | ||||||
WormBase-Compara | ||||||
Structured_description | Concise_description | bcat-1 encodes a branched-chain amino acid aminotransferase that, by homology, is predicted to catalyze the first reaction in the catabolism of essential branched-chain amino acids such as leucine, isoleucine, and valine; in C. elegans, large-scale RNA-mediated interference (RNAi) screens indicate that bcat-1 activity is required for embryonic and larval development. | Paper_evidence | WBPaper00004424 | ||
WBPaper00004651 | ||||||
Curator_confirmed | WBPerson1843 | |||||
Date_last_updated | 23 Apr 2007 00:00:00 | |||||
Automated_description | Predicted to enable branched-chain-amino-acid transaminase activity. Involved in branched-chain amino acid catabolic process; embryo development; and nematode larval development. Acts upstream of or within determination of adult lifespan. Located in mitochondrion. Is an ortholog of human BCAT2 (branched chain amino acid transaminase 2). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | K02A4.1 | ||||
Corresponding_transcript | K02A4.1.1 | |||||
Other_sequence (65) | ||||||
Associated_feature | WBsf717381 | |||||
WBsf717382 | ||||||
WBsf982257 | ||||||
WBsf1007453 | ||||||
WBsf1007454 | ||||||
WBsf1007455 | ||||||
WBsf1024141 | ||||||
WBsf236520 | ||||||
Experimental_info | RNAi_result | WBRNAi00000799 | Inferred_automatically | RNAi_primary | ||
WBRNAi00027821 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00113698 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00016424 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00090701 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00113697 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00049654 | Inferred_automatically | RNAi_primary | ||||
Expr_pattern | Chronogram1431 | |||||
Chronogram1998 | ||||||
Expr6303 | ||||||
Expr9526 | ||||||
Expr12614 | ||||||
Expr1016785 | ||||||
Expr1030730 | ||||||
Expr1153380 | ||||||
Expr2009579 | ||||||
Expr2027816 | ||||||
Drives_construct | WBCnstr00002071 | |||||
WBCnstr00004210 | ||||||
WBCnstr00022449 | ||||||
WBCnstr00037065 | ||||||
WBCnstr00038736 | ||||||
Construct_product | WBCnstr00014091 | |||||
WBCnstr00022449 | ||||||
WBCnstr00037065 | ||||||
WBCnstr00038736 | ||||||
Regulate_expr_cluster | WBPaper00060459:bcat-1(RNAi)_downregulated | |||||
WBPaper00060459:bcat-1(RNAi)_upregulated | ||||||
Microarray_results (24) | ||||||
Expression_cluster (202) | ||||||
Interaction (153) | ||||||
Map_info | Map | X | Position | 8.78096 | ||
Positive | Positive_clone | K02A4 | Inferred_automatically | From CDS info | ||
From sequence, transcript, pseudogene data | ||||||
Pseudo_map_position | ||||||
Reference (15) | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
Method | Gene |