WormBase Tree Display for Gene: WBGene00001149

WBGene00001149 SMap: S_parent: Sequence: K02A4
  Identity: Version: 2
    Name: CGC_name: bcat-1
      Sequence_name: K02A4.1
      Molecular_name: K02A4.1
        K02A4.1.1
        CE03457
      Other_name: ECA39 Accession_evidence: EMBL U21550
        eca-39
        CELE_K02A4.1 Accession_evidence: NDB BX284606
      Public_name: bcat-1
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:23 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 07 Jul 2004 10:08:30 WBPerson1971 Name_change: CGC_name: bcat-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: bcat
    Allele (46)
    Strain: WBStrain00001179
      WBStrain00001764
      WBStrain00047484
    Component_of_genotype: WBGenotype00000032
      WBGenotype00000033
      WBGenotype00000034
    RNASeq_FPKM (74)
    GO_annotation (29)
    Ortholog: WBGene00051181 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00023554 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00140799 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00109249 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00120381 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00115639 Pristionchus pacificus From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00225000 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g3162 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g2361 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP21.g9547 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g13132 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g17742 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g4453 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g21400 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g10174 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g20520 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g29792 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g945 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00020.g1263 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-bcat-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g18830 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00213.g7182 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_00533.g12543 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_00006 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_024931 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g12206 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g11370 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_X0219600 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g20322 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00241255 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00273300 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00265252 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00267566 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00286298 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000003909 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      SGD:S000001251 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0030482 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-9358 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040718-425 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:976 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:977 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:104861 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1276534 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:2195 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:68948 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00012855 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Concise_description: bcat-1 encodes a branched-chain amino acid aminotransferase that, by homology, is predicted to catalyze the first reaction in the catabolism of essential branched-chain amino acids such as leucine, isoleucine, and valine; in C. elegans, large-scale RNA-mediated interference (RNAi) screens indicate that bcat-1 activity is required for embryonic and larval development. Paper_evidence: WBPaper00004424
            WBPaper00004651
          Curator_confirmed: WBPerson1843
          Date_last_updated: 23 Apr 2007 00:00:00
      Automated_description: Predicted to enable branched-chain-amino-acid transaminase activity. Involved in branched-chain amino acid catabolic process; embryo development; and nematode larval development. Acts upstream of or within determination of adult lifespan. Located in mitochondrion. Is an ortholog of human BCAT2 (branched chain amino acid transaminase 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: K02A4.1
    Corresponding_transcript: K02A4.1.1
    Other_sequence (65)
    Associated_feature: WBsf717381
      WBsf717382
      WBsf982257
      WBsf1007453
      WBsf1007454
      WBsf1007455
      WBsf1024141
      WBsf236520
  Experimental_info: RNAi_result: WBRNAi00000799 Inferred_automatically: RNAi_primary
      WBRNAi00027821 Inferred_automatically: RNAi_primary
      WBRNAi00113698 Inferred_automatically: RNAi_primary
      WBRNAi00016424 Inferred_automatically: RNAi_primary
      WBRNAi00090701 Inferred_automatically: RNAi_primary
      WBRNAi00113697 Inferred_automatically: RNAi_primary
      WBRNAi00049654 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram1431
      Chronogram1998
      Expr6303
      Expr9526
      Expr12614
      Expr1016785
      Expr1030730
      Expr1153380
      Expr2009579
      Expr2027816
    Drives_construct: WBCnstr00002071
      WBCnstr00004210
      WBCnstr00022449
      WBCnstr00037065
      WBCnstr00038736
    Construct_product: WBCnstr00014091
      WBCnstr00022449
      WBCnstr00037065
      WBCnstr00038736
    Regulate_expr_cluster: WBPaper00060459:bcat-1(RNAi)_downregulated
      WBPaper00060459:bcat-1(RNAi)_upregulated
    Microarray_results (24)
    Expression_cluster (202)
    Interaction (153)
  Map_info: Map: X Position: 8.78096
    Positive: Positive_clone: K02A4 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (15)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene