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WormBase Tree Display for Gene: WBGene00000523

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Name Class

WBGene00000523EvidencePerson_evidenceWBPerson765
SMapS_parentSequenceC01C10
IdentityVersion1
NameCGC_nameclc-2
Sequence_nameC01C10.1
Molecular_nameC01C10.1a
C01C10.1a.1
CE28881
C01C10.1b
CE53399
C01C10.1b.1
Other_nameCELE_C01C10.1Accession_evidenceNDBBX284606
Public_nameclc-2
DB_infoDatabaseAceViewgeneXI51
WormQTLgeneWBGene00000523
WormFluxgeneWBGene00000523
NDBlocus_tagCELE_C01C10.1
PanthergeneCAEEL|WormBase=WBGene00000523|UniProtKB=Q11085
familyPTHR10671
NCBIgene180999
RefSeqproteinNM_001375068.3
NM_076856.7
SwissProtUniProtAccQ11085
TrEMBLUniProtAccA0A4V0IK28
UniProt_GCRPUniProtAccQ11085
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:21WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classclc
Allele (46)
StrainWBStrain00032009
RNASeq_FPKM (74)
GO_annotation00003803
00003804
00057138
00057139
00057140
00057141
00057142
00107533
Contained_in_operonCEOPX088
Ortholog (27)
ParalogWBGene00000522Caenorhabditis elegansFrom_analysisPanther
WBGene00000526Caenorhabditis elegansFrom_analysisTreeFam
Panther
WBGene00013458
WBGene00011014Caenorhabditis elegansFrom_analysisTreeFam
WBGene00016067Caenorhabditis elegansFrom_analysisTreeFam
WBGene00010742Caenorhabditis elegansFrom_analysisTreeFam
Panther
WBGene00016706Caenorhabditis elegansFrom_analysisPanther
WBGene00021415Caenorhabditis elegansFrom_analysisPanther
Structured_description (2)
Molecular_infoCorresponding_CDSC01C10.1a
C01C10.1b
Corresponding_transcriptC01C10.1a.1
C01C10.1b.1
Other_sequenceNAC00990_1
BU666339.1
Dviv_isotig23650
GR12997
GRC02095_1
CBC17674_1
Associated_featureWBsf655190
WBsf662966
WBsf1005831
WBsf1005832
WBsf1005833
WBsf1023243
WBsf235933
Experimental_infoRNAi_resultWBRNAi00009908Inferred_automaticallyRNAi_primary
WBRNAi00088425Inferred_automaticallyRNAi_primary
WBRNAi00077666Inferred_automaticallyRNAi_primary
WBRNAi00077665Inferred_automaticallyRNAi_primary
WBRNAi00039290Inferred_automaticallyRNAi_primary
Expr_patternExpr1207
Expr1208
Expr2560
Expr1014543
Expr1030312
Expr1143408
Expr2010042
Expr2028283
Drives_constructWBCnstr00010853
WBCnstr00037476
Construct_productWBCnstr00010853
WBCnstr00037476
AntibodyWBAntibody00000650
Microarray_results (20)
Expression_clusterWBPaper00031040:TGF-beta_adult_upregulated
WBPaper00032976:dosage_compensated_genes
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00040560:hpl-2_embryo_upregulated
WBPaper00042561:smg-2(RNAi)_downregulated
WBPaper00042561:smgl-1(RNAi)_downregulated
WBPaper00044736:oscillating_dev_expression
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
WBPaper00045316:prg-1_upregulated_L4
WBPaper00045521:Oogenic
WBPaper00046012:tdp-1(ok803)_upregulated
WBPaper00046121:ecdoderm_unique
WBPaper00048690:hermaphrodite-Z1-Z4-daughter_enriched
WBPaper00048690:male-Z1-Z4-daughter_enriched
WBPaper00048988:neuron_expressed
WBPaper00049489:AMsh-glia_enriched
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049732:blmp-1(tm548);daf-7(e1372ts)_vs_daf-7(e1372ts)_downregulated
WBPaper00049920:hyl-2(tm2031)_upregulated
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050496:unc-39(hp701)_regulated
WBPaper00050743:elli-1(sam-3)_downregulated
WBPaper00051352:Long-Term-Association-Memory_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053321:lin-15B(RNAi)_downregulated_starved-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
WBPaper00053388:dauer_regulated_Cluster1
WBPaper00053402:cco-1(RNAi)_upregulated
WBPaper00053599:female_vs_male_upregulated
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00054493:hpl-2(tm1489)_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin_downregulated
WBPaper00055354:Rifampicin_upregulated
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056161:hermaphrodite_enriched_siRNA
WBPaper00056443:DietaryRestriction_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056826:SGP_biased
WBPaper00057068:numr-1(RNAi)_downregulated_Cadmium
WBPaper00057288:Cold_downregulated_transcript
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058691:set-2(bn129)_upregulated
WBPaper00059471:EGL-43_interacting
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059987:Wounding_upregulated
WBPaper00060526:plp-1(ok2155)_downregulated
WBPaper00060661:sensory-neuron_enriched
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00061203:let-418(n3536)_downregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:AMsh
WBPaper00061340:CEPsh
WBPaper00061340:CEPso
WBPaper00061340:F_U
WBPaper00061340:G2_and_W_blasts
WBPaper00061340:Glia
WBPaper00061340:hyp3
WBPaper00061340:ILsh_OLLsh_OLQsh
WBPaper00061340:Neuroblast_HSN_PHB
WBPaper00061479:hda-1(ne4748)_upregulated
WBPaper00061527:ldb-1_2877-scd-1_3086
WBPaper00061527:lon-8-C18D11.1_11630
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062440:crh-1(n3315)_downregulated
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065225:nhr-42(tm1375)_upregulated_uninfected
WBPaper00065841:5_0
WBPaper00065841:5_1
WBPaper00065841:21_0
WBPaper00065841:37_0
WBPaper00065975:P-body_vs_WholeAnimal_enriched
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066085:sin-3(tm1276)_upregulated
cgc4489_group_14
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00029437:dcr-1_upregulated
WBPaper00030985:Enterococcus_faecalis_downregulated
WBPaper00030985:Erwinia_carotovora_upregulated
WBPaper00030985:Photorhabdus_luminescens_upregulated
WBPaper00031003:0hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00034661:AgNPs_upregulated
WBPaper00035084:embryo_enriched_AIN-2_IP
WBPaper00035084:L2_enriched_AIN-2_IP
WBPaper00035084:L3_enriched_AIN-2_IP
WBPaper00035084:L4_enriched_AIN-2_IP
WBPaper00035227:heat_shock_regulated
WBPaper00036123:Atrazine_regulated
WBPaper00036383:ash-2_Day8_regulated
WBPaper00038172:aak-2overexpression_down_regulated
WBPaper00038172:crh-1null_up_regulated
WBPaper00038172:tax-6null_up_regulated
WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2up
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00041174:environmental
WBPaper00041174:genotypic
WBPaper00041174:genotypic_and_environmental
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041960:daf-16_fasting_upregulated
WBPaper00041960:kgb-1_fasting_upregulated
WBPaper00041960:N2_fasting_upregulated
WBPaper00041960:N2_fasting_upregulated_anytime
WBPaper00042274:tbx-2(bx59)_upregulated
WBPaper00047070:xpa-1_UV_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00048989:N2_rapamycin_upregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053827:pyoverdine_upregulated
WBPaper00057098:SiO2-nanoparticles_upregulated
[cgc6390]:Cluster_A
InteractionWBInteraction000126407
WBInteraction000126827
WBInteraction000140913
WBInteraction000140914
WBInteraction000147230
WBInteraction000190786
Map_infoMapXPosition-1.73343Error0.007289
PositivePositive_cloneC01C10Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point4948
4679
5066
Pseudo_map_position
ReferenceWBPaper00005946
WBPaper00018356
WBPaper00039831
WBPaper00043459
WBPaper00044402
WBPaper00044723
RemarkSequence connection from [Asano A, Tsukita S]
Name exchange requested by Dr. Asano: clc-2 = C01C10.1 and clc-4 = T05A10.2Person_evidenceWBPerson765
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene