WormBase Tree Display for Gene: WBGene00011014
expand all nodes | collapse all nodes | view schema
| WBGene00011014 | SMap | S_parent | Sequence | R04F11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | hpo-30 | Paper_evidence | WBPaper00038231 | |||||
| Person_evidence | WBPerson26 | ||||||||
| Sequence_name | R04F11.1 | ||||||||
| Molecular_name | R04F11.1 | ||||||||
| R04F11.1.1 | |||||||||
| CE40102 | |||||||||
| Other_name | CELE_R04F11.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | hpo-30 | ||||||||
| DB_info | Database | AceView | gene | 5M788 | |||||
| WormQTL | gene | WBGene00011014 | |||||||
| WormFlux | gene | WBGene00011014 | |||||||
| NDB | locus_tag | CELE_R04F11.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00011014|UniProtKB=Q21731 | |||||||
| family | PTHR35574 | ||||||||
| NCBI | gene | 187592 | |||||||
| RefSeq | protein | NM_073686.4 | |||||||
| TREEFAM | TREEFAM_ID | TF316179 | |||||||
| TrEMBL | UniProtAcc | Q21731 | |||||||
| UniProt_GCRP | UniProtAcc | Q21731 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 26 Apr 2011 13:31:47 | WBPerson2970 | Name_change | CGC_name | hpo-30 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hpo | ||||||||
| Allele (21) | |||||||||
| Strain | WBStrain00032350 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00072507 | ||||||||
| 00072508 | |||||||||
| 00118325 | |||||||||
| Ortholog (25) | |||||||||
| Paralog | WBGene00000523 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00000526 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00010742 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00016067 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00013458 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Concise_description | hpo-30 encodes a claudin homolog that may be required for normal cohesion of apical junctions in epithelia; hpo-30 is worm-specific, with obvious homologs only in C. elegans; claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. | Paper_evidence | WBPaper00004961 | |||||
| WBPaper00005654 | |||||||||
| WBPaper00005946 | |||||||||
| WBPaper00005975 | |||||||||
| WBPaper00012856 | |||||||||
| WBPaper00018356 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 27 Aug 2013 00:00:00 | ||||||||
| Automated_description | Located in dendrite. Expressed in body wall musculature; neurons; and ventral nerve cord. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R04F11.1 | |||||||
| Corresponding_CDS_history | R04F11.1:wp156 | ||||||||
| Corresponding_transcript | R04F11.1.1 | ||||||||
| Other_sequence | HBC24506_1 | ||||||||
| ACC16373_1 | |||||||||
| EW742392.1 | |||||||||
| EX014239.1 | |||||||||
| JI249175.1 | |||||||||
| Associated_feature | WBsf1001558 | ||||||||
| WBsf1020556 | |||||||||
| WBsf234659 | |||||||||
| WBsf234660 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00088772 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00115949 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00017413 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00051249 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00088665 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11196 | ||||||||
| Expr12471 | |||||||||
| Expr13811 | |||||||||
| Expr13812 | |||||||||
| Expr14557 | |||||||||
| Expr1026465 | |||||||||
| Expr1154951 | |||||||||
| Expr2012570 | |||||||||
| Expr2030807 | |||||||||
| Drives_construct | WBCnstr00018213 | ||||||||
| WBCnstr00030991 | |||||||||
| WBCnstr00040129 | |||||||||
| WBCnstr00040130 | |||||||||
| WBCnstr00041160 | |||||||||
| Construct_product | WBCnstr00020949 | ||||||||
| WBCnstr00030991 | |||||||||
| WBCnstr00040130 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (106) | |||||||||
| Interaction (19) | |||||||||
| Map_info | Map | V | Position | 3.99794 | Error | 0.001051 | |||
| Positive | Positive_clone | R04F11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (13) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
