WormBase Tree Display for Gene: WBGene00000302
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| WBGene00000302 | SMap | S_parent | Sequence | C56A3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | cav-2 | Person_evidence | WBPerson464 | |||||
| Sequence_name | C56A3.7 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_C56A3.7 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | cav-2 | ||||||||
| DB_info | Database | AceView | gene | 5O39 | |||||
| WormQTL | gene | WBGene00000302 | |||||||
| WormFlux | gene | WBGene00000302 | |||||||
| NDB | locus_tag | CELE_C56A3.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000302|UniProtKB=Q18879 | |||||||
| family | PTHR10844 | ||||||||
| NCBI | gene | 179838 | |||||||
| RefSeq | protein | NM_001269596.3 | |||||||
| NM_001269595.3 | |||||||||
| NM_001269594.3 | |||||||||
| NM_001269597.3 | |||||||||
| SwissProt | UniProtAcc | Q18879 | |||||||
| TREEFAM | TREEFAM_ID | TF315736 | |||||||
| UniProt_GCRP | UniProtAcc | Q18879 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cav | ||||||||
| Allele | WBVar00087835 | Inferred_automatically | From strain object: BA1090 | ||||||
| WBVar01062051 | |||||||||
| WBVar01062052 | |||||||||
| WBVar01499886 | |||||||||
| WBVar01062053 | |||||||||
| WBVar01062054 | |||||||||
| WBVar01062055 | |||||||||
| WBVar01062056 | |||||||||
| WBVar01062057 | |||||||||
| WBVar01062058 | |||||||||
| WBVar01062059 | |||||||||
| WBVar01062060 | |||||||||
| WBVar01062061 | |||||||||
| WBVar02115640 | |||||||||
| WBVar01062062 | |||||||||
| WBVar02115641 | |||||||||
| WBVar01062063 | |||||||||
| WBVar02115642 | |||||||||
| WBVar01062064 | |||||||||
| WBVar01062065 | |||||||||
| WBVar01062066 | |||||||||
| WBVar01062067 | |||||||||
| WBVar01062068 | |||||||||
| WBVar01062069 | |||||||||
| WBVar02024498 | |||||||||
| WBVar00264100 | |||||||||
| WBVar01744011 | |||||||||
| WBVar02061951 | |||||||||
| WBVar02061952 | |||||||||
| WBVar02061953 | |||||||||
| WBVar02061954 | |||||||||
| WBVar01975278 | |||||||||
| WBVar02061955 | |||||||||
| WBVar02061956 | |||||||||
| WBVar02061957 | |||||||||
| WBVar02061958 | |||||||||
| WBVar02061959 | |||||||||
| WBVar02146904 | |||||||||
| WBVar00590556 | |||||||||
| WBVar01870277 | |||||||||
| WBVar01870278 | |||||||||
| WBVar01870279 | |||||||||
| WBVar01870280 | |||||||||
| WBVar01870281 | |||||||||
| WBVar01870282 | |||||||||
| WBVar02054777 | |||||||||
| WBVar01870283 | |||||||||
| WBVar01870284 | |||||||||
| WBVar01870285 | |||||||||
| WBVar01870286 | |||||||||
| WBVar01870287 | |||||||||
| WBVar01842459 | |||||||||
| WBVar01870288 | |||||||||
| WBVar00013040 | |||||||||
| WBVar01870289 | |||||||||
| WBVar01870290 | |||||||||
| WBVar01870291 | |||||||||
| WBVar00013045 | |||||||||
| WBVar01870292 | |||||||||
| WBVar01870293 | |||||||||
| WBVar01499621 | |||||||||
| WBVar01870294 | |||||||||
| WBVar01870295 | |||||||||
| WBVar01870296 | |||||||||
| WBVar01870297 | |||||||||
| WBVar00475137 | |||||||||
| WBVar01870298 | |||||||||
| WBVar01870299 | |||||||||
| WBVar00475138 | |||||||||
| WBVar01870300 | |||||||||
| WBVar00475139 | |||||||||
| WBVar01870301 | |||||||||
| WBVar00475140 | |||||||||
| WBVar00249442 | |||||||||
| WBVar00475141 | |||||||||
| WBVar01870302 | |||||||||
| WBVar00475142 | |||||||||
| WBVar01870303 | |||||||||
| WBVar01870304 | |||||||||
| WBVar01870305 | |||||||||
| WBVar01870306 | |||||||||
| WBVar01913554 | |||||||||
| WBVar01499093 | |||||||||
| WBVar02151003 | |||||||||
| WBVar01500212 | |||||||||
| WBVar01500213 | |||||||||
| WBVar01499299 | |||||||||
| WBVar01462572 | |||||||||
| WBVar01499316 | |||||||||
| Legacy_information | No mutants known. Encodes predicted 261aa protein, 28% identical to cav-1. Residues 214-351 have 24% identity to mammalian caveolins. 2.4 kb transcript detected. Predicted gene C56A3.7 | ||||||||
| Strain | WBStrain00000430 | ||||||||
| WBStrain00003572 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (19) | |||||||||
| Ortholog (25) | |||||||||
| Paralog | WBGene00000301 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | cav-2 encodes one of two C. elegans proteins related to caveolins, integral transmembrane proteins that are believed to function in regulation of signal transduction and that are the major component of caveolae, specialized lipid rafts found in the plasma membrane of most cell types; as loss of cav-2 function via large-scale RNA-mediated interference (RNAi) screens does not result in any obvious abnormalities, the role of cav-2 in C. elegans development and/or behavior is not yet known; cav-2 mRNA is expressed in eggs and mixed stage populations. | Paper_evidence | WBPaper00002653 | |||||
| WBPaper00003590 | |||||||||
| WBPaper00005654 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson324 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables lipid transporter activity. Involved in parturition and regulation of egg-laying behavior. Located in apical plasma membrane. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C56A3.7a | |||||||
| C56A3.7b | |||||||||
| C56A3.7c | |||||||||
| C56A3.7d | |||||||||
| Corresponding_transcript | C56A3.7a.1 | ||||||||
| C56A3.7b.1 | |||||||||
| C56A3.7c.1 | |||||||||
| C56A3.7d.1 | |||||||||
| Other_sequence (12) | |||||||||
| Associated_feature | WBsf647464 | ||||||||
| WBsf1001843 | |||||||||
| WBsf1001844 | |||||||||
| WBsf232786 | |||||||||
| WBsf232787 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00043257 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00102916 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00102917 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00102909 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027704 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012452 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00102915 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00102910 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram499 | ||||||||
| Expr2724 | |||||||||
| Expr5596 | |||||||||
| Expr12158 | |||||||||
| Expr1020786 | |||||||||
| Expr1030193 | |||||||||
| Expr1147237 | |||||||||
| Expr2009737 | |||||||||
| Expr2027977 | |||||||||
| Drives_construct | WBCnstr00004024 | ||||||||
| WBCnstr00020296 | |||||||||
| WBCnstr00020297 | |||||||||
| WBCnstr00020479 | |||||||||
| WBCnstr00037594 | |||||||||
| Construct_product | WBCnstr00020296 | ||||||||
| WBCnstr00020479 | |||||||||
| WBCnstr00020480 | |||||||||
| WBCnstr00037594 | |||||||||
| Antibody | WBAntibody00002615 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (179) | |||||||||
| Interaction (14) | |||||||||
| Map_info | Map | V | Position | 5.45137 | Error | 0.007118 | |||
| Positive | Positive_clone | C56A3 | Person_evidence | WBPerson464 | |||||
| Author_evidence | Tang Z | ||||||||
| Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
| Mapping_data | Multi_point | 4176 | |||||||
| 4324 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00002653 | ||||||||
| WBPaper00003590 | |||||||||
| WBPaper00004384 | |||||||||
| WBPaper00006323 | |||||||||
| WBPaper00024791 | |||||||||
| WBPaper00027612 | |||||||||
| WBPaper00028448 | |||||||||
| WBPaper00035456 | |||||||||
| WBPaper00046406 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Data extracted from Tang et al. (1997) | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
